Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313B05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 28 0.97
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 27 1.3
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 1.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.2
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy... 26 3.0
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 3.0
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 5.2
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 25 6.8
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 6.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 9.0
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 207 STQIEGEPE--LGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSP 335
+ +I+G PE LGC Y++ N +NL V K Y+A + P
Sbjct: 366 AAKIDGVPEYALGCHNYLNLPNIANLLVNPRTGKHGYVAKFYLEP 410
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 253 TYSKQPSSGSPSICVELLFSLVFSNLYSFS 164
+YS++P SPS ++ FS V S L FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 378 HTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREET 518
HT + + LE+ ++ + ++ + +A D+FKA F+E T
Sbjct: 532 HTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGLDIFKAAFKEFT 578
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 237 GCLEYVSTYNFSNLDVGFMK---NKSLYIAIAFPSPKILNLNVFDKLLTVHTFEGLLKNL 407
G L ++ +N NLDV + K L + ++F +++ L + FEG +KN
Sbjct: 524 GILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGLKELLLFEGDVKNT 583
Query: 408 EDADFTLVSEDGEKFR 455
+FT+ + E FR
Sbjct: 584 YGLNFTINLKAVEGFR 599
>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 39 GDIFLLHIFIQRYCEGSFSISISYGSEMEIDKKQKIVRLTKSLKEYKFENTRENSNSTQI 218
G++FLL +QR + S+ S+ E I+ K + S+ ++E ++ + QI
Sbjct: 14 GELFLLPSHLQRMKASAKSLGYSWPGEQYIENKLREAVQDTSMARVRWELSKAGDVTVQI 73
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 123 EIDKKQKIVRLTKSLKEYKFENTRENSNSTQIEGEPELGCLEYVSTYNFSNLDVG 287
+ID ++ R K ++ K +N R +++ + E +YV +NF N VG
Sbjct: 292 KIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 342 LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMF 506
L L +K++ VH F + + F+ V + EKF K LAA + +++F
Sbjct: 996 LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 387 QKYELLTIYQKHSDSVFSDWEMQWLCTVI 301
+K+ELL + + FS + WLCT++
Sbjct: 87 RKWELLQNLYSNLTTCFSHIDGAWLCTIV 115
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -2
Query: 373 VNNLSKTFRFSIFGLGNAMAMYS--DLFF 293
++ LSKT +F + G AM +YS LFF
Sbjct: 45 ISTLSKTLKFPVRTSGLAMLLYSRFQLFF 73
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 189 TRENSNSTQIEGEPELGCLEYVSTYNFSNLDVGF 290
T N N+ IE C +ST N+S D G+
Sbjct: 138 TLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGW 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,008
Number of Sequences: 5004
Number of extensions: 46472
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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