Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B05f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant r...    25   2.0  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   8.2  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   8.2  

>AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant
           receptor Or5 protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 306 LYIAIAFPSPKILNLNVFDKLLTVHTF 386
           LY+A+   S K  N+ V   LLTV T+
Sbjct: 283 LYVAVTGLSTKAANVGVLFILLTVETY 309


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 381 TFEGLL-----KNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFR 509
           TFE LL     ++LED+D   +SE    FR+ ++ L A   V  A  R
Sbjct: 506 TFERLLLDRLNEHLEDSDNPQLSEYQYGFRLGRSTLLAIQQVVNAARR 553


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 438 DGEKFRVHKAILAAHSDVFKAMFRE 512
           DG       A +  H+D+FK +F+E
Sbjct: 440 DGVPNAALTAAIRKHTDIFKKLFQE 464


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,115
Number of Sequences: 2352
Number of extensions: 10556
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)