Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 472 RMALCTLNFSPSSDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGL 329
           RM  C L+  P      +S  SKF +   ++  ++ +     F+ F L
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNL 432


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 472 RMALCTLNFSPSSDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGL 329
           RM  C L+  P      +S  SKF +   ++  ++ +     F+ F L
Sbjct: 385 RMQHCELHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFNL 432


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 168 KEYKFENTRENSNSTQIEGEPELG 239
           KE K +  ++  NST + G P  G
Sbjct: 268 KEEKAQKEKDKPNSTTMNGSPGSG 291


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 336 KILNLNVFDKLLTVHTF 386
           K +N+N+ D   +VH+F
Sbjct: 912 KFMNVNMLDTYESVHSF 928


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,485
Number of Sequences: 438
Number of extensions: 3063
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)