BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313B04f (484 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 169 1e-42 01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 169 1e-42 08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 29 2.0 02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 27 7.9 >04_04_0407 - 24983491-24983575,24983655-24984015,24984367-24984406, 24984466-24984468 Length = 162 Score = 169 bits (410), Expect = 1e-42 Identities = 80/111 (72%), Positives = 90/111 (81%) Frame = -3 Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192 F PKT + R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+ Sbjct: 52 FHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 111 Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 39 K IKAAVKK+YDI KVNTLIRPDGKKKAYV+L DYDALDVANKIGII Sbjct: 112 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 162 >01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 Length = 152 Score = 169 bits (410), Expect = 1e-42 Identities = 80/111 (72%), Positives = 90/111 (81%) Frame = -3 Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192 F PKT + R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV A+ Sbjct: 42 FHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 101 Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 39 K IKAAVKK+YDI KVNTLIRPDGKKKAYV+L DYDALDVANKIGII Sbjct: 102 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152 >08_02_0094 + 12277756-12278574,12280314-12280418,12280487-12280543, 12280969-12281041,12281525-12281703,12281788-12281961, 12282041-12282326,12282433-12282509,12282599-12282668, 12282751-12282822,12282920-12283155,12283240-12283374, 12283466-12283761,12284237-12284408,12284510-12284608, 12284704-12284835,12284950-12285050,12285426-12285615, 12285723-12285761 Length = 1103 Score = 29.1 bits (62), Expect = 2.0 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 221 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 117 L+ +H H IK +KK YD + +K +I+P Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334 >02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 Length = 816 Score = 27.1 bits (57), Expect = 7.9 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = +1 Query: 334 GCLGGSNVLGLRK 372 GC GGSN++G+RK Sbjct: 766 GCAGGSNLIGIRK 778 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,084,883 Number of Sequences: 37544 Number of extensions: 194501 Number of successful extensions: 468 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 468 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 987904180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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