Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B04f
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   169   1e-42
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    169   1e-42
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    29   2.0  
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996           27   7.9  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  169 bits (410), Expect = 1e-42
 Identities = 80/111 (72%), Positives = 90/111 (81%)
 Frame = -3

Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192
           F  PKT +  R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV   A+
Sbjct: 52  FHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 111

Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 39
           K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+L  DYDALDVANKIGII
Sbjct: 112 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 162


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  169 bits (410), Expect = 1e-42
 Identities = 80/111 (72%), Positives = 90/111 (81%)
 Frame = -3

Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192
           F  PKT +  R PKYPR S P RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV   A+
Sbjct: 42  FHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKAD 101

Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 39
           K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+L  DYDALDVANKIGII
Sbjct: 102 KKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 221 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 117
           L+  +H     H IK  +KK YD + +K   +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334


>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
          Length = 816

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 334 GCLGGSNVLGLRK 372
           GC GGSN++G+RK
Sbjct: 766 GCAGGSNLIGIRK 778


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,084,883
Number of Sequences: 37544
Number of extensions: 194501
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)