Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B04f
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   2e-41
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)        116   8e-27
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       30   1.1  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   4.6  
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)                  27   8.1  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  165 bits (400), Expect = 2e-41
 Identities = 79/109 (72%), Positives = 90/109 (82%)
 Frame = -3

Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192
           F  PKT    R+PKYPR S P+ N++D Y IIK PLT+E+AMKKIEDNNTLVFIV   AN
Sbjct: 164 FHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKHPLTTESAMKKIEDNNTLVFIVDVRAN 223

Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIG 45
           K  IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DYDALDV+NK+G
Sbjct: 224 KPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSNKVG 272


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score =  116 bits (280), Expect = 8e-27
 Identities = 56/68 (82%), Positives = 61/68 (89%)
 Frame = -3

Query: 248 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDA 69
           MKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KKAYVRLA DYDA
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDA 60

Query: 68  LDVANKIG 45
           LDV+NK+G
Sbjct: 61  LDVSNKVG 68


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 374 HFRXPKTFEPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKI 237
           H   P+ F PP+H   PRK  P +N  +   N+      PL   +A KKI
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKI 115


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 292 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 375
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
          Length = 662

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 195 CTCVNNKDQGVVIFNL-LHCCFRREREFNDVVGIH---AISLRQRLPWVFRVP 341
           CTC+ N+DQ +V  +  L   F  E   N V+G       S+R+ + W  RVP
Sbjct: 413 CTCLTNRDQVLVFASSGLWKVFSAEEVANLVLGFFRQIKESVRKGIIWGSRVP 465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,640
Number of Sequences: 59808
Number of extensions: 241536
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)