Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B04f
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...   162   1e-40
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...   158   2e-39
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    33   0.076
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ...    29   1.2  
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc...    29   2.2  
At1g05950.1 68414.m00624 expressed protein                             28   3.8  
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    27   6.6  
At5g11550.1 68418.m01347 expressed protein                             27   8.8  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score =  162 bits (393), Expect = 1e-40
 Identities = 78/111 (70%), Positives = 87/111 (78%)
 Frame = -3

Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192
           F  PKT   PR PKYP+ S   RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV   A+
Sbjct: 44  FHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRAD 103

Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 39
           K  IK AVKK+YDI   KVNTLIRPDG KKAYVRL  DYDALDVANKIGII
Sbjct: 104 KKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score =  158 bits (384), Expect = 2e-39
 Identities = 77/111 (69%), Positives = 86/111 (77%)
 Frame = -3

Query: 371 FRXPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 192
           F  PKT   PR  KYP+ S   RN++D Y I+K+PLT+E+AMKKIEDNNTLVFIV   A+
Sbjct: 44  FHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRAD 103

Query: 191 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 39
           K  IK AVKK+YDI   KVNTLIRPDG KKAYVRL  DYDALDVANKIGII
Sbjct: 104 KKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -3

Query: 200 SANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 102
           SA+K  IK  ++ LY  +V KVNTL   DGKKK
Sbjct: 38  SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69


>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
           dependent protease VAR2 GI:7650138 from [Arabidopsis
           thaliana]
          Length = 695

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 223 PWSLLFTQVQTSTISRLQSRNSM 155
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610


>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
           dependent protease GI:7650138 from [Arabidopsis
           thaliana]
          Length = 685

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 223 PWSLLFTQVQTSTISRLQSRNSM 155
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603


>At1g05950.1 68414.m00624 expressed protein
          Length = 590

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 179 KAAVKKLYDINVAKVNTLI-RPDGKKKAYVRLARDY 75
           KAA+K+ Y+I   KV  L+  P  + KA  RL   Y
Sbjct: 291 KAALKRRYEIKAKKVAALLSHPGARGKATTRLQNRY 326


>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 362 PKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIED 231
           PK FE P+ P++P+  LPK        + K P   +  + K+ +
Sbjct: 52  PK-FEVPKLPEFPKPELPKLPEFPKPELPKIPEIPKPELPKVPE 94



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 350 EPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKI 237
           E P+ P+ P+  LPK   +   ++ KFP  S+  + K+
Sbjct: 143 ELPKMPEIPKPELPKFPEIPKPDLPKFPENSKPEVPKL 180


>At5g11550.1 68418.m01347 expressed protein 
          Length = 314

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 362 PKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKI 237
           P T  PP HP  P   LP    + + + I +  LTS +   K+
Sbjct: 76  PSTAPPPPHPPPPPPPLPVTTTLQETFQIAELHLTSVSESDKL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,209,066
Number of Sequences: 28952
Number of extensions: 166715
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)