Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   2.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   5.2  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   9.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.0  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 402 SIKNVRSITHLWDLNLRFLAVWEGSLCNSIFPPF 503
           S KN    T  W LNL  L  W+  L N++  PF
Sbjct: 277 SNKNTTIGTISWLLNLFVLGSWKSPLLNALHYPF 310


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 268 LLKNVISKKFLYNHIYEHVFQ*NGKKIFIQT 360
           LLKN+ SK  L NHI  +    N  K F+QT
Sbjct: 337 LLKNLSSKIKLCNHILMYQATFNEVKNFLQT 367


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 386 KFSLNFX*KCQIHNTPMGPKPKISGCMGRKSLQFDIST 499
           K   NF  K ++H TP GPK  +   +  K  + DI T
Sbjct: 356 KMPENFTYKPKLHGTPGGPKLSLPRSLVSKG-EIDIPT 392


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
 Frame = +2

Query: 296 FFIIIFMNTFSSRMERKYSFR------RFSCHINLEKFS 394
           FF  IF+NT++S +     F       RF C +N  K S
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHFRFICSLNFGKIS 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,599
Number of Sequences: 5004
Number of extensions: 40718
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)