Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0621 - 5115642-5115881,5116029-5116229,5116333-5116528,511...    28   4.0  
11_06_0337 - 22454281-22456399,22458520-22459388                       27   6.9  
02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045           27   9.1  

>12_01_0621 -
           5115642-5115881,5116029-5116229,5116333-5116528,
           5116747-5117033
          Length = 307

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 CHINLEKFSLNFX*KCQIHNTPMGPKPKISG 460
           C   ++   +NF  K  +H+TP GP+P  SG
Sbjct: 11  CSTPIQGNEINFS-KLYLHHTPAGPRPNQSG 40


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = -2

Query: 511  SFQNGGNIELQRLPSHTARNLRFRSHRCVMDLTFLXEIQTEFLQI--YVTRKPSE*IFSF 338
            SF  G   ELQRL       LRFR   CV  L  L  +Q  FL           E I   
Sbjct: 913  SFLEGAMPELQRL------ELRFRIIECVYGLENLSSLQQVFLTFSSQAPEDAKEKISQI 966

Query: 337  HSTGKRVHKYDYKEISL 287
                 ++ K D   IS+
Sbjct: 967  KGLASKIRKADSSNISV 983


>02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045
          Length = 242

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 478 RLPSHTARNLRFRSHRCVMDLTFLXEIQTEFL 383
           R+P+  A  LR   H C + +T + +IQT  L
Sbjct: 65  RVPTVAAALLRLHYHDCFVRITLVNQIQTTLL 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,790
Number of Sequences: 37544
Number of extensions: 213863
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)