Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         29   1.8  
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  

>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 114 PVIYLRCRSEEFCDCQWNTKS 176
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 114  PVIYLRCRSEEFCDCQWNTKS 176
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/62 (20%), Positives = 31/62 (50%)
 Frame = +2

Query: 164 EYKVNNSFFLIYQ*LSKSQIAAFDNSRLMYRFA*SYLKM*SQRNFFIIIFMNTFSSRMER 343
           +Y  ++ ++L+Y   S +Q  +  +  LMY    SY +  S  +++++  M +++     
Sbjct: 170 QYNSSSDYYLMYHMTSYAQYNSSSDYHLMYHMT-SYAQYNSSSDYYLMYHMTSYAQYNSS 228

Query: 344 KY 349
            Y
Sbjct: 229 SY 230



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/55 (21%), Positives = 30/55 (54%)
 Frame = +2

Query: 164 EYKVNNSFFLIYQ*LSKSQIAAFDNSRLMYRFA*SYLKM*SQRNFFIIIFMNTFS 328
           +Y  ++ ++L+Y   S +Q  +  +  LMY    SY +  S  +++++  M +++
Sbjct: 242 QYNSSSDYYLMYHMTSYAQYNSSSDYHLMYHMT-SYARYNSSSDYYLMYHMTSYA 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,388
Number of Sequences: 59808
Number of extensions: 261950
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)