Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 493 NIELQRLPSHTARNLRFRSHRCVMDLTFLXEIQ 395
           N+  Q LP+ T   +R+R   C +++TF+  +Q
Sbjct: 184 NLIYQNLPNSTDTFIRWRCVMCTLNMTFIMIVQ 216


>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 150 CDCQWNTKSIIRFF*FTNNYPK 215
           CD  W+TKS+      + NYPK
Sbjct: 317 CDINWSTKSVCGVVLASGNYPK 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,772
Number of Sequences: 27780
Number of extensions: 220988
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)