Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At2g14530.1 68415.m01626 expressed protein                             27   5.8  

>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1127

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 514  ESFQNGGNIELQRL-PSHTARNLRFRSHRCV-MDLTFLXEIQTEFLQIYVTRKPSE*IFS 341
            E+  NG + E+ +L P+     ++     C  +DLT L + QT F+Q+ +T +     F+
Sbjct: 897  EASWNGSSSEMVKLLPADNFSTVKLNFINCFKLDLTALIQNQTFFMQLILTGEEVPSYFT 956

Query: 340  FHSTGKRV 317
              ++G  +
Sbjct: 957  HRTSGDSI 964


>At2g14530.1 68415.m01626 expressed protein
          Length = 412

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 502 NGGNIELQRLPSHTARNLRFRSHRCVMDLTFLXEIQTE 389
           NG N+E++ +  H   +L+ RS   V+D+T + E + +
Sbjct: 335 NGTNVEVRLVNQHLYNSLKSRSAFHVLDITRMSEYRAD 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,039
Number of Sequences: 28952
Number of extensions: 195450
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)