Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   139   2e-34
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   138   4e-34
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   3.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   3.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   5.2  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    25   6.8  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  139 bits (337), Expect = 2e-34
 Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -3

Query: 519 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 340
           GCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V+
Sbjct: 99  GCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVI 158

Query: 339 KR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLL 163
           +R V+P KEGK   KP  KAPKIQRLVTP  LQ                +   AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 162 AQRKKESKVRRQ 127
           A+R  E+K +R+
Sbjct: 216 AKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  138 bits (335), Expect = 4e-34
 Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -3

Query: 519 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 340
           GCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V+
Sbjct: 99  GCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVI 158

Query: 339 KR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLL 163
           +R V+P KEGK   KP  KAPKIQRLVTP  LQ                +   AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 162 AQRKKESKVRRQ 127
           A+R  E+K +++
Sbjct: 216 AKRVAEAKQKKE 227


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 56  FCGALWLELLESRIEAERLRLISSW 130
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 374 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 279
           LAK ++     +N  +QLR +KK L  D++ L
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 358 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 492
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 47  VDHFCGALWLELLESRIEAERLRLIS 124
           +D F  + W+ L++SR + ++ RLIS
Sbjct: 335 LDEFFVSYWVSLIKSRKQKDKKRLIS 360


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 413 VPNVLPKSVSCSTLAKKMMYVVMSSNACSQLRKEKKTLNPDIRHLRSRG*SP 258
           VP V    VS + +   ++  + + +AC Q +KE + L+    +L S   SP
Sbjct: 25  VPTVAEGGVSVAYVMPNLIPPITTVDACLQYKKEIEQLDSKTTYLMSLYLSP 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,750
Number of Sequences: 5004
Number of extensions: 29965
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)