Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313B01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 134 5e-32
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 132 2e-31
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 1.7
07_01_0673 - 5044940-5045479,5046514-5046579 29 3.0
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.0
06_01_0288 - 2106113-2109055 27 6.9
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 27 9.1
02_01_0295 - 1973115-1973404,1974138-1974663 27 9.1
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 134 bits (323), Expect = 5e-32
Identities = 75/136 (55%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Frame = -3
Query: 519 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV- 343
GCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV
Sbjct: 101 GCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVN 160
Query: 342 -VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKL 166
+R K GK+ + KAPKIQRLVTP+ LQ KS AEY KL
Sbjct: 161 TYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKL 216
Query: 165 LAQRKKESKVRRQEEI 118
LAQR KE + RR E +
Sbjct: 217 LAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 132 bits (319), Expect = 2e-31
Identities = 74/136 (54%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Frame = -3
Query: 519 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV- 343
GCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV
Sbjct: 101 GCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVN 160
Query: 342 -VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKL 166
+R K GK+ + KAPKIQRLVTP+ LQ KS AEY KL
Sbjct: 161 TYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKL 216
Query: 165 LAQRKKESKVRRQEEI 118
LAQR KE + RR E +
Sbjct: 217 LAQRLKEQRERRSESL 232
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -3
Query: 420 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 262
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>07_01_0673 - 5044940-5045479,5046514-5046579
Length = 201
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 167 CLHRERRNPRCVARKRSNAGAQLQCVIPRALAR 69
C+ R RR R R+R N AQL + A+AR
Sbjct: 39 CIRRRRRGIRGGRRRRENGKAQLPVCLDAAVAR 71
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 163 CTEKEGIQGASPGRDQTQALSFN 95
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.5 bits (58), Expect = 6.9
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Frame = +1
Query: 124 FLATHLGFLLSLCKQFSIFS------LRGLALSETLLLQSETMTSTLQNYRGD*PLDLRC 285
+L LG L++L + + FS L L + L L S ++ + + G+ L C
Sbjct: 659 WLGDSLGSLITLSLRSNQFSGEIPESLPQLHALQNLDLASNKLSGPVPQFLGN--LTSMC 716
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGT 465
+ G++V + + D TY+ ++L + ST+ +I +S+++ F G
Sbjct: 717 VDHGYAVMIPSAKFATVYTDGRTYLAIHVYTDKLESYSSTYDY-PLNFIDLSRNQ-FTGE 774
Query: 466 L 468
+
Sbjct: 775 I 775
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 172 SIFSLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCL 288
S+ SL+G A+ LLQS + +T QN+ + LRCL
Sbjct: 515 SLQSLQGKAIEPLELLQSLLLPATKQNHDDVQRVALRCL 553
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 465 GAQEIPGLT--DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 313
GA PG +P R+G + +KIRKL + ++D++ ++K +P K G
Sbjct: 202 GAGTTPGRVYKGKKMPGRMGGTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,059
Number of Sequences: 37544
Number of extensions: 209168
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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