Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313B01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 163 6e-41
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 3.1
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 4.1
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 4.1
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 5.4
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 5.4
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 28 5.4
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 5.4
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 5.4
SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 27 7.1
SB_54765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 27 9.4
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 27 9.4
SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 163 bits (397), Expect = 6e-41
Identities = 83/134 (61%), Positives = 99/134 (73%)
Frame = -3
Query: 519 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 340
GCIVD+ LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV+
Sbjct: 66 GCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVI 125
Query: 339 KRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLA 160
+R LP KEGK K + KAPKIQRLVTPVVLQ K A+YAKLLA
Sbjct: 126 RRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLA 182
Query: 159 QRKKESKVRRQEEI 118
+R KE+K +R E++
Sbjct: 183 KRAKEAKEKRHEQL 196
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 435 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 337
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = -3
Query: 192 SSEAEYAKLLAQRKKESKVRRQEEIK 115
++EAE +L Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 214 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSV 306
L+QSE+ T T NY P++L C GF V
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 387 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 268
+ F+++KEDD+ Y++ L + K NA ++ P+ R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = -3
Query: 468 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 310
+GA+++P L +G V P + G K R++ +++L E DVR + RV ++
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326
Query: 309 ENAKPRHKAP 280
A P+ P
Sbjct: 327 PPATPQEADP 336
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 402 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 292
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
>SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 214
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + I+++A
Sbjct: 26 LAKGKSLFFAFVDLEKAFDRVPHVILWWA 54
>SB_54765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 395 KSVSCSTLAKKM-MYVVMSSNACSQLRKEKKTLN 297
K V+ LA+ + Y+ +++N C QLR +KTL+
Sbjct: 238 KQVAVGNLAESLNKYLNLNNNRCQQLRLGEKTLD 271
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 402 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP 295
A ++ + + DDV+ ++K ++P KEG E+ P
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 402 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP 295
A ++ + + DDV+ ++K ++P KEG E+ P
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + I+++A
Sbjct: 233 LAKGKSLFFAFVDLEKAFDRVPRDILWWA 261
>SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 286 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 372
L G S+FF+F+ E AFD + I+++A
Sbjct: 121 LAKGKSLFFAFVDLEKAFDRVPRDILWWA 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,196
Number of Sequences: 59808
Number of extensions: 236780
Number of successful extensions: 787
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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