Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   110   5e-25
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    30   0.87 
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   4.7  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   6.2  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   6.2  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    27   8.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  110 bits (265), Expect = 5e-25
 Identities = 62/125 (49%), Positives = 76/125 (60%)
 Frame = -3

Query: 519 GCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 340
           GCIVDAN+S L+LVIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 99  GCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158

Query: 339 KRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLA 160
                  +G      +  APKIQRL+TP  +                 +   A Y KLLA
Sbjct: 159 THDKTFPDG----VTKTIAPKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLA 214

Query: 159 QRKKE 145
           +  KE
Sbjct: 215 KYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 106 APAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 246
           AP F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 69  APFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 289 MSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF-LGT 465
           +S F+  F +++W  AF D       F  V  +  F        + YIS+S    + +  
Sbjct: 33  VSSFNKSFGYITWNQAFGDALQSTTVFTLVVPMVFFDLEVLKANSNYISLSMLLGYDISV 92

Query: 466 LAH 474
           L+H
Sbjct: 93  LSH 95


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 145 FLLSLCKQFSIFSLRGLALSETLLL 219
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 459 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 286
           Q  P + D N   R  PK   K  K+ +LS  E+D +  V     P+KE KE  K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 489  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 340
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 271 LDLRCLMSGFSVFFSFLSWEHAFDDITTYIIFFAKVE 381
           L LRC+ + ++  F  +  +H   D+   ++FF  V+
Sbjct: 34  LRLRCVSNTYNTTFYSILLQHCIADLLAMLVFFVAVD 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,804,476
Number of Sequences: 27780
Number of extensions: 174499
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)