Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A12f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 74 2e-12
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 63 3e-09
UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole... 61 1e-08
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti... 60 3e-08
UniRef50_Q6L3J9 Cluster: Polyprotein, putative; n=1; Solanum dem... 44 0.002
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 44 0.003
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli... 44 0.003
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea... 44 0.003
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 43 0.005
UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whol... 40 0.046
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 38 0.18
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t... 38 0.18
UniRef50_Q0JIG5 Cluster: Os01g0802900 protein; n=1; Oryza sativa... 37 0.24
UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum dem... 35 0.98
UniRef50_Q01L83 Cluster: OSIGBa0076I14.9 protein; n=6; Oryza sat... 35 1.3
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu... 33 3.0
UniRef50_A4M4M9 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_A0NWE9 Cluster: Sterol desaturase family protein; n=1; ... 32 6.9
UniRef50_Q4UDY1 Cluster: Putative uncharacterized protein; n=4; ... 32 6.9
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 73.7 bits (173), Expect = 2e-12
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
H AEMRMLRW CG TR D+IRNE +R + VA V +KLR ARL W+GHV +
Sbjct: 580 HVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKR 630
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = -3
Query: 234 KRVLTMNVEGYR-GRGRPKKKWMDCVKDDMGKRGVSDEMVYDRRVWKEK 91
+R M VEG R GRGRPKK W + ++ D+ ++++M DR+ W+ +
Sbjct: 638 RRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSR 686
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 63.3 bits (147), Expect = 3e-09
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
AEMRMLRW CG TR D+IRNE +R + VA + EK+ RL W+GHV
Sbjct: 266 AEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHV 312
Score = 43.6 bits (98), Expect = 0.003
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -3
Query: 201 RGRGRPKKKWMDCVKDDMGKRGVSDEMVYDRRVWKEKTCCADP 73
RGRGRPKK + +K D+ G+ MV DR +W++ ADP
Sbjct: 334 RGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKLIHVADP 376
>UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole
genome shotgun sequence; n=3; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF5629,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 73
Score = 61.3 bits (142), Expect = 1e-08
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
AEM+MLR++ GVTR+D I+ EY+RG+ V +K+R RL W+GHV +
Sbjct: 21 AEMKMLRFSLGVTRMDEIKKEYIRGTAHVRCFGDKVRETRLRWFGHVQR 69
>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF- hand; n=1; Medicago
truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic)
Length = 559
Score = 60.1 bits (139), Expect = 3e-08
Identities = 28/47 (59%), Positives = 33/47 (70%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
AEMRMLRW G TR DRIRN+ +R + VA + EKL RL W+GHV
Sbjct: 308 AEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVENRLRWFGHV 354
>UniRef50_Q6L3J9 Cluster: Polyprotein, putative; n=1; Solanum
demissum|Rep: Polyprotein, putative - Solanum demissum
(Wild potato)
Length = 139
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARL 275
AEMRM RW C TR D+I N+ + + + +V +K+R ARL
Sbjct: 98 AEMRMFRWMCRQTRKDKIGNKDIWSKVGITVVVDKMREARL 138
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = -2
Query: 394 EMRMLRWTCGVTRIDRIRNEYVRGSLKVAL-VTEKLRSARLGWYGHVMK*K 245
EM LR GVTR+D+IRN +++ SL + V +K+ + R+ ++GHV++ K
Sbjct: 907 EMACLRRIMGVTRLDKIRNTHIKESLNLDQDVMDKVSTKRIKYFGHVLRMK 957
Score = 39.5 bits (88), Expect = 0.046
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 213 VEGYRGRGRPKKKWMDCVKDDMGKRGV-----SDEMVYDRRVW 100
V G R RGRP K+W+DC+ +D R + + + DR+ W
Sbjct: 970 VTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTW 1012
>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to fibropellin Ia - Strongylocentrotus
purpuratus
Length = 1096
Score = 43.6 bits (98), Expect = 0.003
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = -3
Query: 228 VLTMNVEGYRGRGRPKKKWMDCVKDDMGKRGV-----SDEMVYDRRVWK 97
+L NV G RGRP K+W DC+K D R V + + DR+VW+
Sbjct: 17 LLNENVHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR 65
>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 958
Score = 43.6 bits (98), Expect = 0.003
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -3
Query: 228 VLTMNVEGYRGRGRPKKKWMDCVKDDMGKRGV-----SDEMVYDRRVWK 97
+L N+ G R RGRP K+W DC+K D R V + + DR+VW+
Sbjct: 878 LLNGNIHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLTEDRKVWQ 926
Score = 42.7 bits (96), Expect = 0.005
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKV-ALVTEKLRSARLGWYGHV 257
H EM LR GVTR DR+RN ++R L + + +++ + RL ++GH+
Sbjct: 817 HTFEMACLRRIMGVTRFDRLRNTHIRTQLNMEETIIDRVATKRLRYFGHI 866
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 42.7 bits (96), Expect = 0.005
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = -2
Query: 394 EMRMLRWTCGVTRIDRIRNEYVRGSLKV-ALVTEKLRSARLGWYGHVMK 251
EMR LR GV +D+IRNE +R L + + + E++ L W+GHV++
Sbjct: 407 EMRCLRTILGVHLMDKIRNEEIRQRLNIPSTICEEITKRCLKWFGHVLR 455
Score = 31.9 bits (69), Expect = 9.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 207 GYRGRGRPKKKWMDCVKDDMG-KRGVSDEMVYDRRVW 100
G R RGRP K+W D V+ D+G +++ DR W
Sbjct: 472 GRRPRGRPPKRWKDQVQYDVGLSTQEAEQRAQDRSDW 508
>UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14527,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 52
Score = 39.5 bits (88), Expect = 0.046
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = -3
Query: 237 GKRVLTMNVEGYRGRGRPKKKWMDCVKDDMGKRGVSDE 124
G+R+L + + G R RGR K+++MD VK+DM G +E
Sbjct: 10 GRRMLRLELPGRRPRGRTKRRFMDVVKEDMKVVGAREE 47
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 37.5 bits (83), Expect = 0.18
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 231 RVLTMNVEGYRGRGRPKKKWMDCVKDDMGKRGV-SDEMVYDRRVWKEKT-CCAD 76
+++ VEG R RGR +K+W D +K+ G + + DR W++ T CAD
Sbjct: 349 QIIESQVEGKRKRGRQRKQWFDNIKEWTGLTYTEAKRLAQDRNNWRKTTRRCAD 402
>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
taurus|Rep: Reverse transcriptase-like - Bos taurus
(Bovine)
Length = 335
Score = 37.5 bits (83), Expect = 0.18
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 234 KRVLTMNVEGYRGRGRPKKKWMDCVKD--DMGKRGVSDEMVYDRRVWKEKTC 85
K ++ +EG R RGR + +W+D + + DMG G+ E+V DR W C
Sbjct: 274 KTLMLGKIEGRRRRGRQRMRWLDGIINSMDMGLGGLR-ELVMDRETWCAVVC 324
>UniRef50_Q0JIG5 Cluster: Os01g0802900 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os01g0802900 protein -
Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 37.1 bits (82), Expect = 0.24
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = -3
Query: 216 NVEGYRGRGRPKKKWMDCVKDDMGKRGVSDEMVYDRRVWKEKTCCADPR*MGEGQGNDE 40
+V G RGR +++ DC + G +GV E D VW E+ A P + EG GNDE
Sbjct: 228 DVHGKRGRLADEQE--DCQVERKGAQGVGAE---DEEVWLERADGAQPGQLDEGPGNDE 281
>UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum
demissum|Rep: Polyprotein, putative - Solanum demissum
(Wild potato)
Length = 115
Score = 35.1 bits (77), Expect = 0.98
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 343 RNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
RNE R + A + +K R ARL W+GHVM+
Sbjct: 53 RNEDFREKVGDASIVDKTRKARLRWFGHVMR 83
>UniRef50_Q01L83 Cluster: OSIGBa0076I14.9 protein; n=6; Oryza
sativa|Rep: OSIGBa0076I14.9 protein - Oryza sativa
(Rice)
Length = 1455
Score = 34.7 bits (76), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +2
Query: 221 VNTLLPTSFSFHHMSIP--SQTRTSQLLCHKCHFQTSSNIFIPYSIYSRYSTRPSQHSHL 394
VN +P F H IP S R LC+ T+++ PYS + PS H
Sbjct: 733 VNNSIP--FQLLHRKIPNYSMLRVFGCLCYPNLSATAAHKLAPYSAACVFLGYPSSHKGY 790
Query: 395 CCMRIAFHQI 424
CC+ I+ +I
Sbjct: 791 CCLNISTRRI 800
>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
nubilalis|Rep: Reverse transcriptase - Ostrinia
nubilalis (European corn borer)
Length = 497
Score = 33.5 bits (73), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 385 MLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
M R GV+ DRIRNE +R +V + ++ + W GH+ +
Sbjct: 387 MERAMLGVSLRDRIRNEEIRRRTRVTDIARRIAKIKWQWAGHIAR 431
>UniRef50_A4M4M9 Cluster: Putative uncharacterized protein; n=1;
Geobacter bemidjiensis Bem|Rep: Putative uncharacterized
protein - Geobacter bemidjiensis Bem
Length = 147
Score = 32.7 bits (71), Expect = 5.2
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 385 MLRWTCGVTRIDRIRNEYVRGSLKVALV-TEKLRSARLGWYGH 260
++RWT G T I + +R +L L +E + AR+GWYGH
Sbjct: 19 VIRWTTGETMQADIGDWMLRFALLEPLKDSEVFKKARVGWYGH 61
>UniRef50_A0NWE9 Cluster: Sterol desaturase family protein; n=1;
Stappia aggregata IAM 12614|Rep: Sterol desaturase
family protein - Stappia aggregata IAM 12614
Length = 259
Score = 32.3 bits (70), Expect = 6.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 66 FTWGRRNMFSPSILFYHIPFRRSLPSYPYRLSRNPSISS*VYLFLYIL 209
F WG R + PS+ +H+P RS+ + + ++ + + F Y+L
Sbjct: 108 FYWGHRVLHWPSLYRFHVPHHRSIAPTVWSNDSSTTVDTLIEHFFYLL 155
>UniRef50_Q4UDY1 Cluster: Putative uncharacterized protein; n=4;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 2057
Score = 32.3 bits (70), Expect = 6.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 283 HFSASLSQVPLSDFL*HIHSVFYLFSLLHTSIATFASLLHANRLSSDN 426
H + ++P+SDF H ++ YL S + T I +LL N ++N
Sbjct: 1145 HKYLTCDEIPMSDFPQHFQTILYLSSFMQTGILPNFNLLKHNVKDNEN 1192
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,377,549
Number of Sequences: 1657284
Number of extensions: 11295326
Number of successful extensions: 30472
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 29428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30450
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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