Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 1.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.7
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 26 3.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 3.9
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.2
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.2
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 6.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 6.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 21 8.1
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 9.0
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 451 VLKFTKQFCYLMKGDSHAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVT 299
+L F ++ + A+ + + ++ TR++R YVR SL+ AL+T
Sbjct: 320 ILYFADDMLLILNSHTLASSLAVYQFCLDFTRLNRTPEPYVRSSLQ-ALIT 369
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 194 LPLYPSTFIVNTLLPTSFSFHHMSIPSQTRTSQLLCHKCHFQTSSNIFIPYSIYSRYSTR 373
LP+ PS+++ NT L +S S S T + + TSSN P +I + S+
Sbjct: 481 LPITPSSYLSNTTLHSSV----QSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSF 536
Query: 374 PS 379
P+
Sbjct: 537 PT 538
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 338 IPYSIYSRYSTRPSQHSHLCCMRIAFHQITKLF 436
+P+ I SRY P + +LCC R+ K F
Sbjct: 56 VPH-IESRYKNLPGNNIYLCCGRLQMSSQYKAF 87
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 250 ISSHVHTIPNAHFSASLSQVPLSDFL*HIHSVFYLFSLLHTSIATFASLLHANRLSSD 423
I S + TIP+A+ ++ SQ PL+ H + +SL S ASL +AN L+ +
Sbjct: 300 IPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSL---SSGPPASLYNANALTPE 354
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 224 NTLLPTSFSFHHMSIPSQTRTSQLLCHKCHFQTSSNIFIPYSIYSRYSTRPSQHSHLCCM 403
NT+ PTSF + + I + + Q L ++ Q + P SI + +P +
Sbjct: 417 NTVRPTSFYYEKLHIKNDNPSFQALPYETTTQERKPVVKPDSI---KTVKPEKKKSKGFF 473
Query: 404 RIAFHQITKLF 436
+ H+I+ +F
Sbjct: 474 KKLMHKISHIF 484
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 274 PNAHFSASLSQVPLSDFL*HIHSVFYLFSLLHTSIATFASLLHANRLSS 420
PN+ ++A++++ ++H+VFY S S++T HA+ +S+
Sbjct: 1943 PNSEYAAAITKS-------NVHAVFYSCSTTEASVSTPEVRFHADEVSN 1984
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 422 ITKLFCEFQNNKLHNSCSSE 481
ITK F FQ LH +C+ E
Sbjct: 622 ITKPFVSFQTAMLHTTCNGE 641
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 449 FEIHKTILLSDERRFACSRDANV 381
+E H T++ D+ RF SRD V
Sbjct: 375 YEKHATVVSDDDIRFILSRDVKV 397
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 21.4 bits (43), Expect(2) = 8.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 107 EYGRRKHVAPTPGKW 63
E + + APTPG W
Sbjct: 953 EDNSKPYTAPTPGAW 967
Score = 21.4 bits (43), Expect(2) = 8.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 83 APTPGKWEKGRG 48
APTPG W+ G
Sbjct: 969 APTPGGWDDEEG 980
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 99 SILFYHIPFRRSLPSYPYRLSRNPSISS 182
+ + Y I F S P+ P+RL R P+I +
Sbjct: 344 AFVLYEI-FVASFPALPFRLMREPTIGA 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,642
Number of Sequences: 5004
Number of extensions: 49744
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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