Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0398 + 24933894-24933916,24934015-24934555                       31   0.56 
12_02_0056 + 12955832-12956410,12957398-12957499                       29   2.3  
07_01_1085 + 9890369-9892114,9892213-9892731                           29   3.0  
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           29   3.0  
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     28   5.2  
11_06_0220 - 21374816-21376849                                         28   5.2  
02_04_0266 - 21415912-21418563                                         28   5.2  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    27   9.1  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    27   9.1  

>04_04_0398 + 24933894-24933916,24934015-24934555
          Length = 187

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 186 PKKKWMDCVKDDMGKRGVSDE-MVYDRRVWKE 94
           PKKK+  CV+D+ G + ++++ MV    +W+E
Sbjct: 19  PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50


>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 122 WYMIEEYGRRKHVAPTPGKW 63
           W ++ + GRR+HV P  G+W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 273 PKRALLSFSVTSATFRLPLTYSFRILSI 356
           P  A+LSFSVT  TFRL  +  F++  +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282


>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 273 PKRALLSFSVTSATFRLPLTYSFRILSI 356
           P  A+LSFSVT  TFRL  +  F++  +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = -2

Query: 463 VKFIVLKFTKQFCYLMKGDSHAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRS 284
           + F+        C+L+   +    +R++RW  G      +R    RG L   + ++++RS
Sbjct: 589 INFVNWTSLSAVCWLVHCRNRRKRLRLVRWFLGRLNSQEVRGGAFRGPLDKLINSQEVRS 648


>11_06_0220 - 21374816-21376849
          Length = 677

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 71  GKWEKGRGMMKTILLSLG 18
           G WE GRGMM TI++ LG
Sbjct: 235 GSWE-GRGMMHTIVIKLG 251


>02_04_0266 - 21415912-21418563
          Length = 883

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 228 LSYQPHFHFITCPYH----PKRALLSFSVTSATFR 320
           L +  + H++  P H    P+ ++LSFS+T  TFR
Sbjct: 248 LFFNGYLHWLINPLHHVKLPRASILSFSLTDETFR 282


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 296 LCHKCHFQTSSNIFIPYSIYSRYSTRPSQHSHLCCMRIAFHQITK 430
           +  +C  + SS +  P S+ S+      +HS L CM    H   K
Sbjct: 201 MAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCMLNMIHDPVK 245


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 291 SFSVTSATFRLPLTYSFRILSILVTPH 371
           S+   SAT+RLPL YSF  L + +  H
Sbjct: 847 SWKNVSATWRLPLLYSFEELCLPIDFH 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,962
Number of Sequences: 37544
Number of extensions: 315751
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)