BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313A12f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0398 + 24933894-24933916,24934015-24934555 31 0.56 12_02_0056 + 12955832-12956410,12957398-12957499 29 2.3 07_01_1085 + 9890369-9892114,9892213-9892731 29 3.0 07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 29 3.0 11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 5.2 11_06_0220 - 21374816-21376849 28 5.2 02_04_0266 - 21415912-21418563 28 5.2 06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 27 9.1 01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 27 9.1 >04_04_0398 + 24933894-24933916,24934015-24934555 Length = 187 Score = 31.1 bits (67), Expect = 0.56 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -3 Query: 186 PKKKWMDCVKDDMGKRGVSDE-MVYDRRVWKE 94 PKKK+ CV+D+ G + ++++ MV +W+E Sbjct: 19 PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50 >12_02_0056 + 12955832-12956410,12957398-12957499 Length = 226 Score = 29.1 bits (62), Expect = 2.3 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 122 WYMIEEYGRRKHVAPTPGKW 63 W ++ + GRR+HV P G+W Sbjct: 25 WIVVLQKGRRRHVVPAFGEW 44 >07_01_1085 + 9890369-9892114,9892213-9892731 Length = 754 Score = 28.7 bits (61), Expect = 3.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 273 PKRALLSFSVTSATFRLPLTYSFRILSI 356 P A+LSFSVT TFRL + F++ + Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282 >07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 Length = 722 Score = 28.7 bits (61), Expect = 3.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 273 PKRALLSFSVTSATFRLPLTYSFRILSI 356 P A+LSFSVT TFRL + F++ + Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282 >11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 Length = 1037 Score = 27.9 bits (59), Expect = 5.2 Identities = 13/60 (21%), Positives = 27/60 (45%) Frame = -2 Query: 463 VKFIVLKFTKQFCYLMKGDSHAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRS 284 + F+ C+L+ + +R++RW G +R RG L + ++++RS Sbjct: 589 INFVNWTSLSAVCWLVHCRNRRKRLRLVRWFLGRLNSQEVRGGAFRGPLDKLINSQEVRS 648 >11_06_0220 - 21374816-21376849 Length = 677 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -1 Query: 71 GKWEKGRGMMKTILLSLG 18 G WE GRGMM TI++ LG Sbjct: 235 GSWE-GRGMMHTIVIKLG 251 >02_04_0266 - 21415912-21418563 Length = 883 Score = 27.9 bits (59), Expect = 5.2 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = +3 Query: 228 LSYQPHFHFITCPYH----PKRALLSFSVTSATFR 320 L + + H++ P H P+ ++LSFS+T TFR Sbjct: 248 LFFNGYLHWLINPLHHVKLPRASILSFSLTDETFR 282 >06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165, 3683776-3683952,3684496-3684711,3684802-3686480, 3686602-3686667,3686753-3686822,3686909-3687547 Length = 1111 Score = 27.1 bits (57), Expect = 9.1 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = +2 Query: 296 LCHKCHFQTSSNIFIPYSIYSRYSTRPSQHSHLCCMRIAFHQITK 430 + +C + SS + P S+ S+ +HS L CM H K Sbjct: 201 MAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCMLNMIHDPVK 245 >01_06_1357 + 36632992-36633621,36634003-36635136,36635525-36636193, 36636250-36636343,36636378-36636490 Length = 879 Score = 27.1 bits (57), Expect = 9.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 291 SFSVTSATFRLPLTYSFRILSILVTPH 371 S+ SAT+RLPL YSF L + + H Sbjct: 847 SWKNVSATWRLPLLYSFEELCLPIDFH 873 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,760,962 Number of Sequences: 37544 Number of extensions: 315751 Number of successful extensions: 790 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 790 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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