Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 41 7e-04
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 36 0.020
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 34 0.082
SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08) 33 0.11
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 33 0.19
SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 33 0.19
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6) 32 0.25
SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3) 32 0.33
SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3) 32 0.33
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08) 32 0.33
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 31 0.44
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 31 0.58
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 31 0.76
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 30 1.0
SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_56583| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6) 29 1.8
SB_52890| Best HMM Match : PH (HMM E-Value=1e-06) 29 1.8
SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 29 1.8
SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43) 29 1.8
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 29 1.8
SB_24941| Best HMM Match : DPRP (HMM E-Value=1) 29 1.8
SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 1.8
SB_12029| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_5933| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_2170| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 29 1.8
SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43) 29 1.8
SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_47792| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6) 29 1.8
SB_46702| Best HMM Match : LETM1 (HMM E-Value=5.5) 29 1.8
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_43612| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_42594| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 1.8
SB_39589| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_37146| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_36046| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 1.8
SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 1.8
SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 1.8
SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07) 29 1.8
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 29 1.8
SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 1.8
SB_13171| Best HMM Match : AT_hook (HMM E-Value=6.4) 29 1.8
SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032) 28 4.1
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 28 5.4
SB_13147| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_33901| Best HMM Match : RVT_1 (HMM E-Value=5.5e-30) 27 7.1
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 27 7.1
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 27 7.1
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 27 9.4
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 27 9.4
SB_21362| Best HMM Match : IF3_N (HMM E-Value=8.8) 27 9.4
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 27 9.4
SB_3127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -3
Query: 213 VEGYRGRGRPKKKWMDCVKDDMGKRGVSDEMVYDRRVWKEKT--CCADPR 70
+EG R RGRP+K W + +++D+ G++ DR WK K +DPR
Sbjct: 581 IEGKRTRGRPRKNWHEVLREDLKLAGLTPHDTQDRVRWKLKLNHAPSDPR 630
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 394 EMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
E M+RW C + + I +R L + + LR RL WYGHV +
Sbjct: 521 ERAMIRWMCAIKPSNDISTSELRLRLNIEDLDAALRRRRLRWYGHVQR 568
>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 406 SHAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
S +E MLRW C + D +R L + + LR ARL W+GHV
Sbjct: 8 SPRSERAMLRWMCALKPEDATSLSTIRDRLGIESLELALRKARLQWFGHV 57
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 207 GYRGRGRPKKKWMDCVKDDMGKRGVSDEMVYDRRVWKE 94
G R +GRP+K W D D+ G+ + +R+ ++
Sbjct: 76 GRRMKGRPRKTWADATLSDLKTAGLKASVASNRKACRD 113
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNVEGYRGRGRPKKKW---MDCVKDDMGKR-GVSDEMVYDR 109
W G + + ++ LT N +G R RGRP+ W +D MGK G + + +R
Sbjct: 414 WIGHTLRKPATNITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQMGKTWGQLERLAQNR 473
Query: 108 RVWKE 94
W+E
Sbjct: 474 DAWRE 478
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 33.9 bits (74), Expect = 0.082
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
+E MLRW C + D +R L + + L ARL W+GHV
Sbjct: 539 SERAMLRWMCALKPEDDPSLSPIRDRLGIESLELALWKARLRWFGHV 585
>SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 335
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYG 263
+E MLRW C + D +R L + + LR ARL W+G
Sbjct: 278 SERAMLRWMCALKPEDDTSLSTIRDRLGIESLELALRKARLRWFG 322
>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 629
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++VL + GYR +GRPKK++ D +K ++
Sbjct: 504 WSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 547
>SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 159
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++VL + GYR +GRPKK++ D +K ++
Sbjct: 34 WSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 77
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++VL + GYR +GRPKK++ D +K ++
Sbjct: 3274 WSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 3317
>SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6)
Length = 179
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
+E MLRW C + D + L+ + LR ARL W+ HV
Sbjct: 90 SERAMLRWMCALKPEDDTSLSTIWDRLRTESLELALRKARLRWFRHV 136
>SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
H MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 130 HTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 180
>SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 328
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
H MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 130 HTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 180
>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 652
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 397 AEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYG 263
+E MLRW C + D +R L + + LR ARL W+G
Sbjct: 595 SEHAMLRWICVLKPEDDTSLSTIRDRLGIESLELALRKARLRWFG 639
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 388 RMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
R LR CG+ + I NE + + + + ++R RL W GHV++
Sbjct: 10 RCLRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVLR 55
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++VL + GYR +GRPKK++ D +K ++
Sbjct: 783 WYGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 826
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 388 RMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
R LR + DRI N V + K+ A+L WYGHV++
Sbjct: 744 RSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWYGHVIR 789
>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 963
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++V + GYR +GRPKK++ D +K ++
Sbjct: 838 WSGHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNL 881
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++V + GYR +GRPKK++ D +K ++
Sbjct: 509 WSGHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNL 552
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 388 RMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
R LR + DRI N V+ + K+ A+L W GHV++
Sbjct: 470 RSLRAIMRIRWQDRITNLEVQDRADTTSIEAKILQAQLRWSGHVIR 515
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVKDDM 148
W G + E+ + ++V + GYR +GRPKK++ D +K ++
Sbjct: 676 WSGHVIRMEESRIPRQVFYRELASGYRKKGRPKKRYKDNLKSNL 719
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 30.7 bits (66), Expect = 0.76
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 206 PSTFIVNTL-LPTSFSFHHMSIPSQTR-TSQLLCHKCHFQTSSNIFIPYSIYSRYSTRPS 379
PS + NT+ +P+ ++ + ++IPSQ + + + H T I IP + T PS
Sbjct: 379 PSQYHHNTITIPSQYNHNTITIPSQYHHNTNTIPSQYHHNT---ITIPSQCHHNTITTPS 435
Query: 380 QHSH 391
QH H
Sbjct: 436 QHHH 439
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 30.7 bits (66), Expect = 0.76
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Frame = +2
Query: 194 LPLYPSTFIVNTLLPTSFSFHHMSIPSQTRTSQLLCH-KCHFQTSSNIFIPYSIYS---- 358
L ++ T V + + FS +S PS ++S H CH SN P +
Sbjct: 195 LVIFTLTAFVFPFISSIFSSSSLSPPSSLQSSSPSRHLHCHRPRLSNHHRPSRHHHCHRP 254
Query: 359 RYST--RPSQHSHLCCMRIAFHQITKLFCEFQNNKLHNSCSSEP 484
R S RPS+H H C R++ H +L +N+L S P
Sbjct: 255 RLSNHHRPSRHLHCHCPRLSNHH--RLSRHLHSNRLRLSIHHHP 296
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNVEGYRGRGRPKKKW---MDCVKDDMGK--RGVSDEMVYD 112
W G + + ++ LT N +G R RGRP+ W +D MGK + D + D
Sbjct: 169 WIGHTLPKPATNITRQSLTWNPKGKRKRGRPRNTWRRDLDADAKHMGKTMKDAVDPHLRD 228
Query: 111 RRVW--KEKTC 85
++ KE++C
Sbjct: 229 QQAGFRKERSC 239
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNVEGYRGRGRPKKKW---MDCVKDDMGK 142
W G + + ++ LT N +G R RGRP+ W +D MGK
Sbjct: 529 WIGHTLPKPATNITRQSLTWNPKGKRKRGRPRNTWRRDLDADAKHMGK 576
>SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 388 RMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
R LR CG+ + I N+ + + + + ++R RL W GHV++
Sbjct: 10 RCLRRICGIFWPNVISNQELYKNTSSSSLVNQIRYRRLKWLGHVLR 55
>SB_56583| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6)
Length = 234
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR LR +T +D++ N+ + + + + L L W GHV
Sbjct: 148 HAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 196
>SB_52890| Best HMM Match : PH (HMM E-Value=1e-06)
Length = 449
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 85 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 131
>SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 226
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 53 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 99
>SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43)
Length = 677
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 525 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 571
>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 603 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 649
>SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 223
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 53 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 99
>SB_24941| Best HMM Match : DPRP (HMM E-Value=1)
Length = 354
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR LR +T +D++ N+ + + + + L L W GHV
Sbjct: 190 HAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 238
>SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 134 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 180
>SB_12029| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 192
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 19 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 65
>SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 318
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 145 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 191
>SB_5933| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 47
>SB_2170| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 47
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 53 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 99
>SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43)
Length = 458
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 354 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 400
>SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 226
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 53 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 99
>SB_47792| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6)
Length = 255
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR LR +T +D++ N+ + + + + L L W GHV
Sbjct: 139 HAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 187
>SB_46702| Best HMM Match : LETM1 (HMM E-Value=5.5)
Length = 306
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR LR +T +D++ N+ + + + + L L W GHV
Sbjct: 190 HAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 238
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 2445 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 2491
>SB_43612| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 47
>SB_42594| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 186
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 13 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 59
>SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 290
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 186 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 232
>SB_39589| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 47
>SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 169 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 215
>SB_37146| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 47
>SB_36046| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 47
>SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 280
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 134 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 180
>SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 406
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 53 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 99
>SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 169 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 215
>SB_26678| Best HMM Match : I-set (HMM E-Value=1e-07)
Length = 563
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = -1
Query: 467 NCEVYCFEIHKTILLSDERRFAC-SRDANVA 378
+C ++ F+ HK+ + SDE R AC +RDAN+A
Sbjct: 41 SCFLFYFD-HKSTIDSDEARTACRARDANLA 70
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR LR +T +D++ N+ + + + + L L W GHV
Sbjct: 1500 HAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 1548
>SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 348
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 186 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 232
>SB_13171| Best HMM Match : AT_hook (HMM E-Value=6.4)
Length = 188
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR LR +T +D++ N+ + + + + L L W GHV
Sbjct: 72 HAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 120
>SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ N V + + LR RL W GHV +
Sbjct: 53 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCR 99
>SB_2208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 195 FLYILPHS*LTLSYQ-PHFHFITCPYHPKRALLSFSVTSATFRLPLTYSFRILSILVTPH 371
F +LP + +Q P +TC ++ + A+ S VTS+ F L L +L + T
Sbjct: 57 FCRVLPRCSDLIDHQRPSVCMVTCQFNSRCAVSSAGVTSSLFALSLRDGRSVLDLTYTST 116
Query: 372 VHRN 383
+ R+
Sbjct: 117 LTRS 120
>SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)
Length = 426
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 403 HAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHV 257
HA MR L+ +T +D++ N+ + + + + L L W GHV
Sbjct: 310 HAYMMRHLKEIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 358
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNVEGYRGRGRPKKKWMDCVKDDMGKRGV----SDEMVYDR 109
W G + ++ + K L G R GRPK W + ++ + + M DR
Sbjct: 49 WLGHVLRMDQRRIPKVALRWTPPGRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDR 108
Query: 108 RVWK 97
R WK
Sbjct: 109 RKWK 112
>SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 416
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 391 MRMLRWTCGVTRIDRI-RNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
MR LR G+ D++ +NE + S L T +R RL W GHV +
Sbjct: 243 MRCLRRILGIHWSDKVTKNEVLERSGLPTLFT-LIRQRRLRWLGHVCR 289
>SB_13147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 167 SIHFFLGLPLPLYPSTFIVNTLLPT-SFSFHHMSIPSQTRTSQLLCHKCHFQTSSNIFIP 343
++H F P+ + ++F+++T +P +FS+ H+ +S + H F S+ I
Sbjct: 34 TMHLFSSAPVS-HNASFLISTCIPQCTFSYQHLYPMMHLFSSAPVSHNAPFLISTCI-PQ 91
Query: 344 YSIYSRYSTRPSQHSHL 394
Y+ Y+++ P+ H L
Sbjct: 92 YTFYNQH-LYPTMHLFL 107
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/102 (23%), Positives = 37/102 (36%)
Frame = +2
Query: 86 HVFSFHTLLSYXXXXXXXXXXXXXFTQSIHFFLGLPLPLYPSTFIVNTLLPTSFSFHHMS 265
HV S HTL +Y +TQ H L + +T ++T T H
Sbjct: 103 HVHSTHTLNTYTQQHAHSTRKLHTYTQHAH------LTRHSTTRALHTHTQTRTLNMHTQ 156
Query: 266 IPSQTRTSQLLCHKCHFQTSSNIFIPYSIYSRYSTRPSQHSH 391
RT L H + N+ ++ +R +QH+H
Sbjct: 157 HAHSARTLNTLTQHAHSTCTLNMHTQHAHSARTLNTLTQHAH 198
>SB_33901| Best HMM Match : RVT_1 (HMM E-Value=5.5e-30)
Length = 841
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 394 EMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYGHVMK 251
+ R LR + D I NE V V + KL RL W+GH+ +
Sbjct: 705 QQRHLRLILKIKWDDYISNEDVLRRANVDDIETKLARNRLRWFGHLCR 752
>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 401
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 276 WDGMDM**NENEVGKRVLTMNV-EGYRGRGRPKKKWMDCVK 157
W G + E+ + ++V ++ GYR +G PKK++ D +K
Sbjct: 280 WSGHVIRMEESRIPRQVFYSDLASGYRKKGPPKKRYKDNLK 320
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 176 NGWIA*KTIWVRGE*ATKWYMIEEYGRRKHVAPTPGKWEKGRGMMKTILLSL 21
+GW A W E A K + EY RR+ V P K EK GM +SL
Sbjct: 1059 SGWPA----WCVTE-AEKQEYVREYERREGVVLDPAKIEKNPGMRSMSKMSL 1105
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 259 HVHTIPNAHFSASLSQVPLSDFL*HIHSVFYLFSLL 366
HVH +P+ H + VP + +H+V Y+ ++L
Sbjct: 865 HVHAVPHIHGVPDVHAVPHIHAVPDVHAVPYIHAIL 900
>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 1347
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -1
Query: 131 ATKWYMIEEYGR-RKHVAPTPGKWEKGRGMMKTILLSLGGNGN 6
A KW + E R RK P KWE R + + + L GN
Sbjct: 1266 AKKWQLSREVSRFRKCPGNCPVKWEVSRELSREVSRELTHQGN 1308
>SB_21362| Best HMM Match : IF3_N (HMM E-Value=8.8)
Length = 83
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 379 RWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARL 275
RW V +DR E R ++A + +K+RS +L
Sbjct: 3 RWGVPVNLVDRYSEELRRPKEEIAQIMDKIRSLKL 37
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 233 LPTSFSFHHMSIPSQTRTSQLLCHKCHFQTSSNI 334
L TS HH+S S R H H TSS++
Sbjct: 196 LSTSSHVHHLSTSSHVRHLSTSSHVRHLSTSSHV 229
>SB_3127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 228 LSYQPHFHFITCPYHPKRALLSFSVTSATFRLPLTYSFRILSILVTPHVHRNIR 389
++ P + ++C YH RA + S + R+LS+L+ VH+ +R
Sbjct: 63 MTKDPLVNKVSCEYHTGRAEIKRSHAKYHLETEQRFPKRLLSLLLWCPVHKTMR 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,838
Number of Sequences: 59808
Number of extensions: 365506
Number of successful extensions: 1178
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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