Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL731551-1|CAI40246.1| 3623|Homo sapiens cubilin (intrinsic fact... 30 5.7
AL596445-1|CAH72450.1| 3623|Homo sapiens cubilin (intrinsic fact... 30 5.7
AL365511-1|CAB97207.1| 64|Homo sapiens hypothetical protein pr... 30 5.7
AL365215-1|CAH73630.1| 3623|Homo sapiens cubilin (intrinsic fact... 30 5.7
AF243129-1|AAK61830.1| 3494|Homo sapiens intrinsic factor-vitami... 30 5.7
AF034611-1|AAC82612.1| 3623|Homo sapiens intrinsic factor-B12 re... 30 5.7
BC113657-1|AAI13658.1| 673|Homo sapiens ATP-binding cassette, s... 29 9.9
AF351824-1|AAK84663.1| 672|Homo sapiens sterolin-2 protein. 29 9.9
AF324494-1|AAK84078.1| 673|Homo sapiens sterolin-2 protein. 29 9.9
AF320294-1|AAG40004.1| 673|Homo sapiens ABCG8 protein. 29 9.9
AC108476-2|AAY24011.1| 673|Homo sapiens unknown protein. 29 9.9
>AL731551-1|CAI40246.1| 3623|Homo sapiens cubilin (intrinsic
factor-cobalamin receptor) protein.
Length = 3623
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 94 LLPYSSIIYHFVAHSPLTHIVFHA 165
++PYS + HFV + + HI FHA
Sbjct: 2659 VIPYSQVWIHFVTNERVEHIGFHA 2682
>AL596445-1|CAH72450.1| 3623|Homo sapiens cubilin (intrinsic
factor-cobalamin receptor) protein.
Length = 3623
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 94 LLPYSSIIYHFVAHSPLTHIVFHA 165
++PYS + HFV + + HI FHA
Sbjct: 2659 VIPYSQVWIHFVTNERVEHIGFHA 2682
>AL365511-1|CAB97207.1| 64|Homo sapiens hypothetical protein
protein.
Length = 64
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 7 FPFPPRDNKIVFIIPLPFSHLPGVGATCFLLPY 105
FP + N + P F HL V ++CFLLPY
Sbjct: 31 FPHYRQKNPRLLREPSDFLHLKSVKSSCFLLPY 63
>AL365215-1|CAH73630.1| 3623|Homo sapiens cubilin (intrinsic
factor-cobalamin receptor) protein.
Length = 3623
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 94 LLPYSSIIYHFVAHSPLTHIVFHA 165
++PYS + HFV + + HI FHA
Sbjct: 2659 VIPYSQVWIHFVTNERVEHIGFHA 2682
>AF243129-1|AAK61830.1| 3494|Homo sapiens intrinsic factor-vitamin B12
receptor protein.
Length = 3494
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 94 LLPYSSIIYHFVAHSPLTHIVFHA 165
++PYS + HFV + + HI FHA
Sbjct: 2530 VIPYSQVWIHFVTNERVEHIGFHA 2553
>AF034611-1|AAC82612.1| 3623|Homo sapiens intrinsic factor-B12
receptor precursor protein.
Length = 3623
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 94 LLPYSSIIYHFVAHSPLTHIVFHA 165
++PYS + HFV + + HI FHA
Sbjct: 2659 VIPYSQVWIHFVTNERVEHIGFHA 2682
>BC113657-1|AAI13658.1| 673|Homo sapiens ATP-binding cassette,
sub-family G (WHITE), member 8 (sterolin 2) protein.
Length = 673
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 SPIYLGSAQHVFSFHTLLSY 118
+PIYLG+AQH+ + T + Y
Sbjct: 290 TPIYLGAAQHMVQYFTAIGY 309
>AF351824-1|AAK84663.1| 672|Homo sapiens sterolin-2 protein.
Length = 672
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 SPIYLGSAQHVFSFHTLLSY 118
+PIYLG+AQH+ + T + Y
Sbjct: 290 TPIYLGAAQHMVQYFTAIGY 309
>AF324494-1|AAK84078.1| 673|Homo sapiens sterolin-2 protein.
Length = 673
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 SPIYLGSAQHVFSFHTLLSY 118
+PIYLG+AQH+ + T + Y
Sbjct: 290 TPIYLGAAQHMVQYFTAIGY 309
>AF320294-1|AAG40004.1| 673|Homo sapiens ABCG8 protein.
Length = 673
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 SPIYLGSAQHVFSFHTLLSY 118
+PIYLG+AQH+ + T + Y
Sbjct: 290 TPIYLGAAQHMVQYFTAIGY 309
>AC108476-2|AAY24011.1| 673|Homo sapiens unknown protein.
Length = 673
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 59 SPIYLGSAQHVFSFHTLLSY 118
+PIYLG+AQH+ + T + Y
Sbjct: 290 TPIYLGAAQHMVQYFTAIGY 309
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,254,111
Number of Sequences: 237096
Number of extensions: 1783841
Number of successful extensions: 3360
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3360
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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