Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A12f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023606-1|AAY85006.1|  189|Drosophila melanogaster IP06563p pro...    29   2.9  
AE014297-3145|AAF55987.1|  189|Drosophila melanogaster CG13856-P...    29   2.9  
AE013599-523|AAM68870.1| 1020|Drosophila melanogaster CG18654-PB...    29   5.1  

>BT023606-1|AAY85006.1|  189|Drosophila melanogaster IP06563p
           protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +1

Query: 22  RDNKIVFII--PLPFSHLPGVG 81
           +D+KI +I   PLPF H+PG+G
Sbjct: 77  KDSKIYYIPVPPLPFRHIPGIG 98


>AE014297-3145|AAF55987.1|  189|Drosophila melanogaster CG13856-PA
           protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +1

Query: 22  RDNKIVFII--PLPFSHLPGVG 81
           +D+KI +I   PLPF H+PG+G
Sbjct: 77  KDSKIYYIPVPPLPFRHIPGIG 98


>AE013599-523|AAM68870.1| 1020|Drosophila melanogaster CG18654-PB,
           isoform B protein.
          Length = 1020

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 395 CCMRI-AFHQITKLFCEFQNNKLHNSCSS 478
           C  RI A+H IT L C + +  LHN C+S
Sbjct: 273 CRKRIKAYHGITGLTCRWCHMMLHNRCAS 301


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,868,144
Number of Sequences: 53049
Number of extensions: 526695
Number of successful extensions: 1309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)