Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    31   0.38 
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    30   1.2  
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    30   1.2  
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    30   1.2  
Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L23647-2|AAK29995.1|  773|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z92785-4|CAB07201.2|  352|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated p...    27   8.1  
AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.     27   8.1  
AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    27   8.1  
AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -2

Query: 442 FTKQFCYLMKGDSHAAEMRMLRWTCGVTRIDRIRNEYVRGSLKVALVTEKLRSARLGWYG 263
           FTK+    ++    A E +++  T    R   I  E VR   K+      ++  +LGW G
Sbjct: 68  FTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAG 127

Query: 262 HVMK*K*G-W*ESVNYECGR 206
           HV +   G W   +N  C R
Sbjct: 128 HVARRTDGRWTTLMNDWCPR 147


>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 253 SSHVHTIPNAHFSASLSQVPLSDFL*HIHSVFYLFSLLHTSIATFASLLHANRLSSDNK 429
           SS    +P+A+ S    Q+P  D    IH      SL H+  A F    H N L+S N+
Sbjct: 753 SSAYSRVPSAYPSQFQRQLPNPDLFLDIHPALQQLSLPHSQSAVFP---HNNTLTSRNR 808


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 253 SSHVHTIPNAHFSASLSQVPLSDFL*HIHSVFYLFSLLHTSIATFASLLHANRLSSDNK 429
           SS    +P+A+ S    Q+P  D    IH      SL H+  A F    H N L+S N+
Sbjct: 753 SSAYSRVPSAYPSQFQRQLPNPDLFLDIHPALQQLSLPHSQSAVFP---HNNTLTSRNR 808


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 253 SSHVHTIPNAHFSASLSQVPLSDFL*HIHSVFYLFSLLHTSIATFASLLHANRLSSDNK 429
           SS    +P+A+ S    Q+P  D    IH      SL H+  A F    H N L+S N+
Sbjct: 753 SSAYSRVPSAYPSQFQRQLPNPDLFLDIHPALQQLSLPHSQSAVFP---HNNTLTSRNR 808


>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 91  FLLPYSSIIYHFVAHSPLTHIVFHAIHP 174
           F   YS++I  F  H+P TH ++ A  P
Sbjct: 414 FYAMYSNLIQEFQGHTPSTHAIYRADSP 441


>L23647-2|AAK29995.1|  773|Caenorhabditis elegans Hypothetical
           protein ZC262.3a protein.
          Length = 773

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 233 LPTSFSFHHMSIPSQTRTSQLLCHKCHFQTSSNIFIPYSI 352
           +P S + H   +     T+QLLC KC  Q S  ++   SI
Sbjct: 317 IPMSSTNHMQKVSFDFSTNQLLCDKCLLQWSLPVYAQTSI 356


>L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical
           protein ZC262.3b protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 233 LPTSFSFHHMSIPSQTRTSQLLCHKCHFQTSSNIFIPYSI 352
           +P S + H   +     T+QLLC KC  Q S  ++   SI
Sbjct: 317 IPMSSTNHMQKVSFDFSTNQLLCDKCLLQWSLPVYAQTSI 356


>Z82076-5|CAB04935.2|  307|Caenorhabditis elegans Hypothetical
           protein W07G1.3 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 164 QSIHFFLGLPLPLYPSTFIVNTLLPTSFSFHH 259
           Q  +++  LPLP  P TF  +TL+P      H
Sbjct: 100 QPSNYYTPLPLPQQPPTFDPSTLMPQQQMMFH 131


>Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical
           protein T10G3.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 273 PKRALLSFSVTSATFRLPLTYSFRILSILVTPH 371
           P   LLS ++ S    LP+   F +L IL+T H
Sbjct: 7   PSNYLLSINIFSIVLTLPMVIIFVLLCILLTIH 39


>Z92785-4|CAB07201.2|  352|Caenorhabditis elegans Hypothetical
           protein F31E9.3 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 460 KFIVLKFTKQFCYLMKGDSHAAEMRMLRWTC 368
           +F+V K ++QFC L+  DS A  ++ +R+ C
Sbjct: 41  RFVVRKVSRQFCLLI--DSKANGLKNIRFHC 69


>U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated
           protein 45 protein.
          Length = 961

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 503 TLKRTSLVRLNKNCEVYCFEIHKTILLSDERRFACSRDANVAMD 372
           T+K  +++ L K C+ +  E  K  +  D RR+AC   + +++D
Sbjct: 519 TMKEEAVISLAKTCKKFLLETEKYSV--DIRRYACEGLSYLSLD 560


>AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.
          Length = 961

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 503 TLKRTSLVRLNKNCEVYCFEIHKTILLSDERRFACSRDANVAMD 372
           T+K  +++ L K C+ +  E  K  +  D RR+AC   + +++D
Sbjct: 519 TMKEEAVISLAKTCKKFLLETEKYSV--DIRRYACEGLSYLSLD 560


>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 275 QTRTSQLLCHKCHFQT 322
           QTRTS L C +C FQT
Sbjct: 40  QTRTSVLQCFQCSFQT 55


>AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical
           protein C44E4.1b protein.
          Length = 814

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -3

Query: 228 VLTMNVEGYRGRGR-----PKKKWMDCVKDDMGKRGVSDEMVYDRRVWKEKTCCADP 73
           +LT NV+   G  R      +K +   VK  +G++ +    + +R +   +TCCADP
Sbjct: 159 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 215


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -3

Query: 228  VLTMNVEGYRGRGR-----PKKKWMDCVKDDMGKRGVSDEMVYDRRVWKEKTCCADP 73
            +LT NV+   G  R      +K +   VK  +G++ +    + +R +   +TCCADP
Sbjct: 2057 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2113


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 228  VLTMNVEGYRGRGRP---KKKWMDCVKDDMGKRGVSDEMVYDRRVWKEKTCCADP 73
            +LT NV+   GR      +K +   VK  +G++ +    + +R +   +TCCADP
Sbjct: 2057 LLTTNVDSSSGRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,283
Number of Sequences: 27780
Number of extensions: 279795
Number of successful extensions: 789
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)