Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28670.1 68417.m04097 protein kinase family protein contains ...    29   1.9  
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot...    28   4.4  
At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family prote...    27   5.8  
At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family prote...    27   5.8  
At4g05430.1 68417.m00825 glycosyl hydrolase family protein 17 si...    27   5.8  
At3g25545.1 68416.m03176 expressed protein                             27   5.8  
At2g39950.1 68415.m04909 expressed protein                             27   5.8  
At4g04650.1 68417.m00680 hypothetical protein                          27   7.7  

>At4g28670.1 68417.m04097 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 625

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 19  PRD---NKIVFIIPLPFSHLPGVGATCFLLPYSSIIYHFVAHSPLTHIVFH 162
           PRD   N+I  I      +L  +   CF    S I+Y F+A++ L HI+F+
Sbjct: 368 PRDEIHNEIDVISRCQHKNLVRLLGCCFTNMNSFIVYEFLANTSLDHILFN 418


>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
           similar to 5.9 kb fsh membrane protein [Drosophila
           melanogaster] GI:157455; contains Pfam profile PF00439:
           Bromodomain
          Length = 590

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 326 RKSESGTCDREAEKCAFGMVWTCDEMKMRLVR 231
           R ++ G  D E+EK   GM+ TC ++ ++L++
Sbjct: 151 RSNQFGPSDPESEKLLAGMLNTCSQILVKLMK 182


>At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 212 WKD--IEEEVDLRRNGWIA*KTIWVRGE*ATKWYMIEEYGRRKHVAPTPGK 66
           W++  I  E++  R+GW     +W+ G   T W  + E  R   +    GK
Sbjct: 432 WEESRIGREIEFPRDGWKKAVNLWLYGSNYTYWRGVRESFRSSFIRVFGGK 482


>At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 212 WKD--IEEEVDLRRNGWIA*KTIWVRGE*ATKWYMIEEYGRRKHVAPTPGK 66
           W++  I  E++  R+GW     +W+ G   T W  + E  R   +    GK
Sbjct: 432 WEESRIGREIEFPRDGWKKAVNLWLYGSNYTYWRGVRESFRSSFIRVFGGK 482


>At4g05430.1 68417.m00825 glycosyl hydrolase family protein 17
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 119

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 430 FCYLMKGDSHAAEMRMLRWTCGVTRID 350
           +C    G + A   R L W CG+ R+D
Sbjct: 23  WCVARPGATQAELQRALDWACGIGRVD 49


>At3g25545.1 68416.m03176 expressed protein
          Length = 267

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 194 LPLYPSTFIVNTLLPTSFSFHHMSIPSQTRTSQLLCHKCHF 316
           LPL PS  I+    P+ + FH  S+PS+T    L+  +  F
Sbjct: 43  LPLRPSLLIIAISSPSLYIFH--SLPSKTLLGSLIMPEVPF 81


>At2g39950.1 68415.m04909 expressed protein
          Length = 636

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 7   FPFPPRDNKIVFIIPLPFSHLPGVGATCFLLPYSSIIYHFVAHSPLTH 150
           + FPP   ++  + PL  S LP  G+  FL+P S +    +   PL H
Sbjct: 445 YQFPPLSIELPSLPPLS-SLLPASGSDGFLIPSSPLDLSDIPPLPLVH 491


>At4g04650.1 68417.m00680 hypothetical protein 
          Length = 332

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 314 FQTSSNIFIPYSIYS--RYSTRPSQHSHLCCM-RIAFHQITKLFCEFQNNKLHNSCS 475
           F  S+N+  P  +     +   PS+  ++C + R+AFH         +N +LH+  S
Sbjct: 198 FTASTNLNPPAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVS 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,139
Number of Sequences: 28952
Number of extensions: 259152
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)