Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    27   1.7  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   9.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   9.0  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = -2

Query: 505 LCVREDRTDGYAGVAL-LVHNTIPFDHIPIANHSIDFSIIAVSINKICFVSVYI----PH 341
           +  RE+ T    GV L  + + + +D+   +    D   I    ++ CF  V +    P+
Sbjct: 579 ILARENTT--LLGVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPN 636

Query: 340 PTSSIFDEIEVIISQLPKPVLILG 269
           P  +IFD+++ II QL     + G
Sbjct: 637 PLMNIFDQLQSIIDQLDNATTLTG 660


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 232 NSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISAPDLS 107
           ++SY    IL   D + F +L  G+ +   Q   G + P+LS
Sbjct: 340 HNSYVNENILPSYDKHVFDVLWDGIPSENPQLQSGFTTPNLS 381


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 208 FLHHSNWNWCYPKLGAVH 261
           F  HSN N   PK+G VH
Sbjct: 274 FRKHSNGNLSSPKIGGVH 291


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 451 EQVKLHQHSHLFYPL 495
           EQ +L+QHSHL Y L
Sbjct: 319 EQYELYQHSHLGYGL 333


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 340 PTSSIFDEIEVIISQLPKPVLILGDFNA 257
           P+  + DE       L  P+LI GDFN+
Sbjct: 534 PSDQLKDERPTYPEYLKIPILICGDFNS 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,735
Number of Sequences: 5004
Number of extensions: 50824
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)