Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 29 1.7
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 28 4.0
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176... 27 6.9
10_06_0172 + 11473892-11474896 27 9.1
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 27 9.1
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 27 9.1
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 27 9.1
>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = -2
Query: 415 NHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQ-HQAWG 239
NH+ S+ A SIN + ++ + T + SQ P D+ Q + A+G
Sbjct: 759 NHAASTSVHAGSINSSAYPTIQPSYSTPDPSQNLYQGTSQYAVPSNQYQDYQQQSNTAYG 818
Query: 238 STNSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISA 119
+ NS+Y + SN +++ AT P + + A
Sbjct: 819 TYNSTYSQQPTQMFVPSNTTPVISQPNATPAPVPQQPVKA 858
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 367 CFVSVYIPHPTSSIFDEIEVI--ISQLPKPVLILGD 266
C V V +P+P+ S + E I I + KPVL+ GD
Sbjct: 674 CVVMVGLPYPSPSDVELTETIKYIENISKPVLVGGD 709
>10_01_0154 -
1764554-1764727,1764829-1764927,1765710-1766172,
1766255-1766541
Length = 340
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 109 SLTTPGLASLLTWKTLSSTYDSDHYPILIT 20
+++TP + L W L+ TY + P+L+T
Sbjct: 184 TISTPSVTYLKLWSPLNGTYVLNDMPLLVT 213
>10_06_0172 + 11473892-11474896
Length = 334
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 367 CFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQHQA 245
C S+Y P P + + + V+ +P VL G F H+A
Sbjct: 27 CEASLYQPPPPAMAYHDGAVLEGAVPVSVLYYGAFPPHHRA 67
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 502 CVREDRTDGYAGVALLVHNTIPFDHIPIANHSI 404
CV E+ +GY+ V +VH +P+ HS+
Sbjct: 450 CVIEEMENGYSKVTWMVHAAYDERAVPVLYHSL 482
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = -2
Query: 268 DFNAQHQAWGSTNSSYYGARI----LDI-LDSNNFC 176
D +Q++ W S N S+Y ARI D+ LD +++C
Sbjct: 380 DKTSQYRVWTSKNFSHYKARIALQNFDVLLDDHDYC 415
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 514 SQYLCVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFSIIA-VSINKICFVSVY 350
S L +DR D + +L++HNT P H + I ++A S+ + F+ +Y
Sbjct: 1236 SNSLRTLKDRRDLFYPFSLILHNTKPVGHQDLVGLVISILLLADFSLVLLTFLQLY 1291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,133
Number of Sequences: 37544
Number of extensions: 294067
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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