Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 50 1e-06
AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical ... 32 0.29
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p... 31 0.66
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 31 0.66
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 31 0.66
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle... 31 0.66
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 31 0.66
Z81108-5|CAB03235.1| 288|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF034258-1|AAC82328.1| 288|Caenorhabditis elegans exonuclease I... 29 2.0
Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81108-6|CAI79211.1| 186|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 28 3.5
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 28 3.5
Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z49910-8|CAA90123.2| 408|Caenorhabditis elegans Hypothetical pr... 27 6.2
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 49.6 bits (113), Expect = 1e-06
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Frame = -2
Query: 358 SVYIPHPTSSIFDEIEVI-----ISQLPKPVLILGDFNAQHQAWGSTNS-SYYGARILDI 197
+VY+P P SS + ++ I Q +I GD NA H AW S S G + ++
Sbjct: 5 NVYVP-PRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAEL 63
Query: 196 LDSN-NFCILNTGVATRRTQPHEGISAPDLSLTTPGLASLLTWKTLSSTYDSDHYPILIT 20
+D + + I N V TR IS+PD+++ T LA+ W TL SDH P+ +
Sbjct: 64 IDLHPDLIIQNEQVHTRADT--YSISSPDITICTADLATKCHWSTLYK-LGSDHIPMKLK 120
Query: 19 L 17
+
Sbjct: 121 I 121
>AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical
protein T27A1.2 protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 344 WNIHRNKTYFINTYC-YYREINAMVC 418
W H+N YFIN +C Y++++N C
Sbjct: 17 WATHQNVHYFINLFCTYHKDVNKSPC 42
>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
protein 73, isoform b protein.
Length = 1638
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 160 VATRRTQPHEGISAPDLSLTTPGLASL 80
+ATR +P +G+ PDL TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 160 VATRRTQPHEGISAPDLSLTTPGLASL 80
+ATR +P +G+ PDL TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 160 VATRRTQPHEGISAPDLSLTTPGLASL 80
+ATR +P +G+ PDL TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257
>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73B protein.
Length = 1638
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 160 VATRRTQPHEGISAPDLSLTTPGLASL 80
+ATR +P +G+ PDL TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73A protein.
Length = 2488
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 160 VATRRTQPHEGISAPDLSLTTPGLASL 80
+ATR +P +G+ PDL TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257
>Z81108-5|CAB03235.1| 288|Caenorhabditis elegans Hypothetical
protein R09B3.1a protein.
Length = 288
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = -2
Query: 505 LCVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPHPTS 332
L V ++ GYAGV LL H I + D + +I +K F+ Y+P+ +
Sbjct: 89 LVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGA 148
Query: 331 SIFD-----EIEVIISQL------PKPVLILGDFNAQH 251
+ + E ++++ KPV+ GD N H
Sbjct: 149 KLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAH 186
>AF034258-1|AAC82328.1| 288|Caenorhabditis elegans exonuclease III
homolog protein.
Length = 288
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = -2
Query: 505 LCVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPHPTS 332
L V ++ GYAGV LL H I + D + +I +K F+ Y+P+ +
Sbjct: 89 LVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGA 148
Query: 331 SIFD-----EIEVIISQL------PKPVLILGDFNAQH 251
+ + E ++++ KPV+ GD N H
Sbjct: 149 KLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAH 186
>Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical
protein F55G7.1 protein.
Length = 395
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 439 VLYYEQVKLHQHSHLFYPLLHINIG 513
V YE+ +HSH F+P H NIG
Sbjct: 124 VFVYEKPDGGEHSHTFFPHAHHNIG 148
>Z81108-6|CAI79211.1| 186|Caenorhabditis elegans Hypothetical
protein R09B3.1b protein.
Length = 186
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 505 LCVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPH 341
L V ++ GYAGV LL H I + D + +I +K F+ Y+P+
Sbjct: 89 LVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPN 145
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 358 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 257
S+ + H S + +E+ + I+Q PVLI GDFN+
Sbjct: 403 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 438
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 358 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 257
S+ + H S + +E+ + I+Q PVLI GDFN+
Sbjct: 419 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 454
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 358 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 257
S+ + H S + +E+ + I+Q PVLI GDFN+
Sbjct: 412 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 447
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 358 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 257
S+ + H S + +E+ + I+Q PVLI GDFN+
Sbjct: 412 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 447
>Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 359 NKTYFINTYCYYREINAMVCN------RNVVKRYCIMN 454
+K++ +NTYC +I+ +C RNV+K+ C N
Sbjct: 403 DKSWVLNTYCKMVQISDELCEGPQKNIRNVLKKTCCFN 440
>Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 359 NKTYFINTYCYYREINAMVCN------RNVVKRYCIMN 454
+K++ +NTYC +I+ +C RNV+K+ C N
Sbjct: 403 DKSWVLNTYCKMVQISDELCEGPQKNIRNVLKKTCCFN 440
>Z49910-8|CAA90123.2| 408|Caenorhabditis elegans Hypothetical
protein F44G4.7 protein.
Length = 408
Score = 27.5 bits (58), Expect = 6.2
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = -2
Query: 262 NAQHQAWGSTNSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISAPDLSLTTPGLAS 83
NAQ+ AW + + A + I +L G R G P S+ P L
Sbjct: 13 NAQNSAWNTLPKLVHRAALPPIAPKTTPSMLVKGEEASRPATSVGSRPPTSSIGFPALPK 72
Query: 82 LLT--WKTLSSTYDSDHYPI 29
L T K++S + YPI
Sbjct: 73 LGTKPMKSISEKPQTPLYPI 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,869
Number of Sequences: 27780
Number of extensions: 274894
Number of successful extensions: 607
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -