Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61030.1 68416.m06828 C2 domain-containing protein similar to...    30   1.1  
At3g60950.1 68416.m06819 C2 domain-containing protein similar to...    30   1.1  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     28   3.3  
At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    27   7.7  
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea...    27   7.7  
At4g13750.1 68417.m02134 expressed protein                             27   7.7  

>At3g61030.1 68416.m06828 C2 domain-containing protein similar to
           CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
           profile PF00168: C2 domain
          Length = 592

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -2

Query: 418 ANHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQHQ 248
           ++H ++  ++    +    +S Y+P+      D ++ +  +  KPV++ GD N  H+
Sbjct: 505 SDHDMEGRMVTAEFDSFYLISTYVPNSV----DGLKGLDLEKSKPVVLTGDLNCAHE 557


>At3g60950.1 68416.m06819 C2 domain-containing protein similar to
           CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
           profile PF00168: C2 domain
          Length = 592

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -2

Query: 418 ANHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQHQ 248
           ++H ++  ++    +    +S Y+P+      D ++ +  +  KPV++ GD N  H+
Sbjct: 505 SDHDMEGRMVTAEFDSFYLISTYVPNSV----DGLKGLDLEKSKPVVLTGDLNCAHE 557


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 127 ISAPDLSLTTPGLASLLTWKTLSSTYDSDHY-PILITLP 14
           +  PD SLTTPG+A+  +  + + TY +     I++ LP
Sbjct: 413 LKQPDKSLTTPGMANPPSLSSENQTYSTQEMRSIVLALP 451


>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 283 VLILGDFNAQHQAWGSTNSSYYGARILDILDSNNFCI-LNTGVA 155
           +L+LG F+   + W S+  SY+ +R +    S+  CI  N  VA
Sbjct: 338 ILLLGGFDKDSETWLSSVQSYFPSRNVVKAHSSMSCIRSNASVA 381


>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
           family protein contains 4 (3 significant) WD-40 repeats;
           similar to periodic tryptophan protein 1 homolog  
           (Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
           (PIR2:I39360) [Homo sapiens]
          Length = 414

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 433 DHIPIANHSIDFSIIAVSI-NKICFVSVYIPHPTSSIFDEIEVIISQLP 290
           DH  +     D  II  +I +++ ++ VY+   + +I+   ++IIS+LP
Sbjct: 116 DHDDLTIRPTDSLIICAAIKHEVNYLEVYVYEESENIYLRNDMIISELP 164


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -2

Query: 460  LLVHNTIPFDHIPIANHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPV 281
            L  H  +    +P        ++  + ++ +CFV  ++         E + IIS+L    
Sbjct: 1165 LSAHEIVKAHILPAFEARSTGAVDGLMVDYLCFVMTHLRSGCHICLKERKYIISELRSKA 1224

Query: 280  LILGDFNAQHQAWGSTN-SSYYGARI 206
            L+L ++  +    GS +    YG ++
Sbjct: 1225 LVLSNYGLKQLGEGSIHFGEEYGNQV 1250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,690
Number of Sequences: 28952
Number of extensions: 249039
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)