Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...   188   4e-49
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    64   2e-11
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    55   6e-09
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    45   6e-06
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    41   1e-04
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    31   0.10 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   1.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.2  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   3.9  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   3.9  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   5.2  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   6.8  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   9.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score =  188 bits (458), Expect = 4e-49
 Identities = 89/138 (64%), Positives = 108/138 (78%)
 Frame = +2

Query: 107 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 286
           E    YY  KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR         GSYVGEV+
Sbjct: 14  ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73

Query: 287 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 466
           K M K KVLVKVHPEGK+VVD+  ++DI ++  N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74  KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133

Query: 467 MMVEKVPDSTYEMVGGLD 520
           MMVEK+PDSTYEMVGGL+
Sbjct: 134 MMVEKIPDSTYEMVGGLE 151


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 32/86 (37%), Positives = 51/86 (59%)
 Frame = +2

Query: 263 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 442
           G  +GEV+K +D ++ +VK     ++VV    NVD + +    RV+L   + T+ +ILP 
Sbjct: 53  GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112

Query: 443 KVDPLVSLMMVEKVPDSTYEMVGGLD 520
           +VDPLV  M +E   D ++  VGGL+
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLN 138


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 27/73 (36%), Positives = 38/73 (52%)
 Frame = +2

Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475
           +K   ++ +    KFVV L + V   D+    RV      Y +   LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170

Query: 476 EKVPDSTYEMVGG 514
           E+ PD TY  VGG
Sbjct: 171 EEKPDVTYGDVGG 183


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 24/83 (28%), Positives = 44/83 (53%)
 Frame = +2

Query: 272 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 451
           +G+ ++ +D+   +V       +VV +   +D   +  +  VAL+  S  L  ILP + D
Sbjct: 58  IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117

Query: 452 PLVSLMMVEKVPDSTYEMVGGLD 520
             +S++  ++ PD +Y  VGGLD
Sbjct: 118 SSISMLRPDERPDVSYADVGGLD 140


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 29/129 (22%), Positives = 61/129 (47%)
 Frame = +2

Query: 134 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 313
           +I +  L+  E  QN  RL+ Q      +   +          G+ + E++   D   ++
Sbjct: 74  RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130

Query: 314 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 493
               PE  + V +   VD + +   C V L +++ ++  +L +  DP++++M ++K P  
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188

Query: 494 TYEMVGGLD 520
           +Y  +GGL+
Sbjct: 189 SYADIGGLE 197


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +2

Query: 302 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 481
           K  ++K        + L   V+  ++     + +  +SY +   LP++ D  V  M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178

Query: 482 VPDSTYEMVGGL 517
            P   Y  +GGL
Sbjct: 179 KPTERYSDIGGL 190


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 197  GPE----DDEDFEIFRRQ*AVTLQSWLCSTGGSPRPSPY 93
            GPE    D ED EIF  Q  +++ S L     SP+P  Y
Sbjct: 1000 GPENVDMDIEDNEIFTNQSTMSVPSMLVENEESPKPDEY 1038


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 378 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 280
           TS+IS+  S S T++PS  +   +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 EELQLIVAEKSQNLRRLQAQ 199
           EEL+LI   K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 310 DLLFIHRFNHFSDVRSLFLQELQLLAQHTNFSVEFITLG 194
           D   IHR +H   +  +  + L  +  HTN  V+ + LG
Sbjct: 469 DTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLVKLG 507


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 289 FNHFSD-VRSLFLQELQLLAQHTNFSVEFITL 197
           F HF + +RS   +   L  +HTN +VE+IT+
Sbjct: 317 FEHFKECIRST--KTYHLFLKHTNTNVEYITM 346


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 223 NFSVEFITLGLKTTKIL 173
           NFSVEF  L L TT IL
Sbjct: 379 NFSVEFTKLPLSTTPIL 395


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 292 RFNHFSDVRSLFLQELQLLAQHTNFSVEFITLG 194
           R  HF D+   F    +      NF+VEF+  G
Sbjct: 312 RRKHFDDINKSFFINTEAGTALRNFAVEFLEAG 344


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 420 LYTKYYPTKSILLCRS*W 473
           +YT+YYPT +   C S W
Sbjct: 552 VYTRYYPTFTAQPCLSGW 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,195
Number of Sequences: 5004
Number of extensions: 37528
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)