Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 3e-35
SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4) 116 1e-26
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 55 3e-08
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 42 2e-04
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 40 0.001
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 31 0.44
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 30 1.3
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 30 1.3
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 29 1.8
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 28 4.1
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 27 9.4
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 27 9.4
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 27 9.4
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 27 9.4
SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91) 27 9.4
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 144 bits (350), Expect = 3e-35
Identities = 80/125 (64%), Positives = 89/125 (71%)
Frame = +2
Query: 146 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 325
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 326 PEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 505
PEGKFVVD+DK +D+ + VDPLVSLMMVEKVPDSTYEM
Sbjct: 142 PEGKFVVDIDKGIDMAE-----------------------VDPLVSLMMVEKVPDSTYEM 178
Query: 506 VGGLD 520
VGGLD
Sbjct: 179 VGGLD 183
>SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4)
Length = 158
Score = 116 bits (279), Expect = 1e-26
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +2
Query: 146 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 325
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 326 PEGKFVVDLDKNVDI 370
PEGKFVVD+DK +D+
Sbjct: 142 PEGKFVVDIDKGIDM 156
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/85 (37%), Positives = 47/85 (55%)
Frame = +2
Query: 263 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 442
G VGEV+K + ++K +VK ++VV + VD + RVAL + T+ + LP
Sbjct: 56 GQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQVDKAKLKQGTRVALDMTTLTIMRYLPR 115
Query: 443 KVDPLVSLMMVEKVPDSTYEMVGGL 517
+VDPLV M E + +Y VGGL
Sbjct: 116 EVDPLVYNMSHEDPGNISYSDVGGL 140
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 48.8 bits (111), Expect = 3e-06
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Frame = +2
Query: 128 ITKIEELQLIVAEKSQNLRRLQAQRN---ELNAKVRMLRXXXXXXXXXGSYVGEVVKPMD 298
+ +I++ L+ E QN RL+ Q E +KV LR VG + + +D
Sbjct: 260 LDRIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDDLRGTPMS-------VGNLEEIID 312
Query: 299 KKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 478
+V + V + VD + + C V L ++ + + +L + DP+V++M +E
Sbjct: 313 DNHAIVSTSVGSEHYVSILSFVDKDLLEPGCTVLLNHKVHAVVGVLSDDADPMVTVMKLE 372
Query: 479 KVPDSTYEMVGGLD 520
K P +Y +GGLD
Sbjct: 373 KAPQESYADIGGLD 386
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +2
Query: 404 RNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG 514
RN+ Y +H LP K+DP V++M VE+ PD TY +GG
Sbjct: 53 RNK-YQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGG 88
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +2
Query: 272 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 451
+G+ ++ +D+ +V + V + +D + + VAL S L ILP + D
Sbjct: 88 IGQFLEAVDQNTGIVASTTGSNYYVRILSTIDKELLKPSASVALHKHSNALVDILPPEAD 147
Query: 452 PLVSLMMVEKVPDSTYEMVGGLD 520
++++ E+ P+ +Y +GG+D
Sbjct: 148 SSIAMLTNEEKPNVSYAEIGGMD 170
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 302 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 481
K ++K + + + V+ ++T V + +SY + + LP + D V M V++
Sbjct: 88 KCAVIKTSTRQTYFLPVIGLVEPENLTPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 147
Query: 482 VPDSTYEMVGGLD 520
P Y +GGLD
Sbjct: 148 RPTEQYSDIGGLD 160
>SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 376 CHGQLSCRSSQRKLYFTQNTTQQSRSSCV 462
CH LSC SQR L Q Q+SR CV
Sbjct: 114 CHVGLSCLKSQRTLRALQKALQRSRVECV 142
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 31.5 bits (68), Expect = 0.44
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 335 KFVVDLDKNV---DINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 505
K ++D D V DIN+ T N + L +E+Y+ H++L K D + S +E T ++
Sbjct: 23 KALLDRDGKVCMLDINEKTGNETLKLLSENYSKHRVLFIKCD-VTSQPQMEAAFQRTKDV 81
Query: 506 VGGLD 520
G LD
Sbjct: 82 FGRLD 86
>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 541
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILPNKVDPL 457
DI ++ C+VA E +TL + LPN +D L
Sbjct: 154 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 184
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILPNKVDPL 457
DI ++ C+VA E +TL + LPN +D L
Sbjct: 525 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 555
>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 476
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILPNKVDPL 457
DI ++ C+VA E +TL + LPN +D L
Sbjct: 89 DIRPISLTCQVAKLMEGFTLSRALPNILDRL 119
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 353 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 457
D N+ + + +CR A+ E+++ H PN VDPL
Sbjct: 215 DCNLQLTCLQPSCRYAVLVEAFSSHPNDPNAVDPL 249
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 350 LDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVP 487
+D+N + + N +L L ++PN VD + M++KVP
Sbjct: 952 IDENFKVWLIEINVNPSLSTSCQVLKDLMPNMVDNTIRPEMIQKVP 997
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILP---NKVDP 454
DI + C+VA E +TL++ILP K+DP
Sbjct: 1274 DIRPIALTCQVAKVMEGFTLNRILPPIMRKLDP 1306
>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1786
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 278 EVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 457
+ V P+ K + VHP K D+ ++ C++A E +TL ++LP+ ++ L
Sbjct: 309 DFVPPLLKSAI---VHPISKQTPPKSIKDDLRPISLTCQMAKICEGFTLIRVLPSVLEQL 365
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILPNKVDPL 457
DI ++ C+VA E TL + LPN +D L
Sbjct: 473 DIRPISLTCQVAKLMEGLTLSRALPNILDRL 503
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 374 DVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
D+ + L + LHK++PN V+ + + ++ D ++ ++G D
Sbjct: 463 DLVKKAQTTLATANLRLHKVVPNSVEVMEAFPAEDRAKDISWGVLGPRD 511
>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILPNKVDPL 457
DI ++ C+VA E TL + LPN +D L
Sbjct: 511 DIRPISLTCQVAKLMEGLTLSRALPNILDRL 541
>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1837
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILP---NKVDP 454
DI + C+VA E +TL +ILP K+DP
Sbjct: 1491 DIRPIALTCQVAKVMEGFTLSRILPPIMRKLDP 1523
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 365 DINDVTANCRVALRNESYTLHKILPNKVDPL 457
DI ++ C+VA E TL + LPN +D L
Sbjct: 531 DILPISLTCQVAKLMEGLTLSRALPNILDRL 561
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 101 KGEGFRPYYITKIEELQLIVAEKSQ 175
KG+G +P + +EE ++I ++KSQ
Sbjct: 494 KGKGHKPLPLVPVEEFEVISSKKSQ 518
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 149 VTLQSWLCSTGGSPRPSP 96
+ L+SWLC+ G RPSP
Sbjct: 347 ILLRSWLCALCGPLRPSP 364
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 134 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLR 235
K+EE + + A+K ++ + LQ + NELN ++ L+
Sbjct: 22 KLEESKNLYAKKLESEKELQDKINELNTEISSLQ 55
>SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91)
Length = 567
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 320 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILP 439
VHP K DI ++ C +A E +TL + LP
Sbjct: 371 VHPLPKLSPPKSIETDIRPISLTCHLAKAMEGFTLSRSLP 410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,168
Number of Sequences: 59808
Number of extensions: 273494
Number of successful extensions: 767
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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