BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313A08f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 203 7e-53 AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 180 7e-46 AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 180 7e-46 Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 62 3e-10 AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 58 5e-09 AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 57 9e-09 AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 57 9e-09 U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 41 5e-04 AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 33 0.12 Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical pr... 29 1.5 Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 29 1.5 Z80220-4|CAB02307.2| 566|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 27 6.2 AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical... 27 6.2 AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 27 6.2 >Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical protein Y49E10.1 protein. Length = 416 Score = 203 bits (495), Expect = 7e-53 Identities = 97/135 (71%), Positives = 111/135 (82%) Frame = +2 Query: 116 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 295 R Y+ TK+++ Q VA+KSQN+RRLQAQRNELN KVRML+ GSYVGEV K M Sbjct: 31 RKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKAM 90 Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475 DKKKVLVKVHPEGK+VVD+DK++DIN + RVALR +SY LHK+LPNKVDPLVSLMMV Sbjct: 91 DKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMV 150 Query: 476 EKVPDSTYEMVGGLD 520 EKVPDSTYEMVGGLD Sbjct: 151 EKVPDSTYEMVGGLD 165 >AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical protein F56F11.4a protein. Length = 411 Score = 180 bits (437), Expect = 7e-46 Identities = 85/135 (62%), Positives = 107/135 (79%) Frame = +2 Query: 116 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 295 RPY+ TK+E+ + VAEKS N+RRL AQ+ ELN KVR+L+ GS+VGEV K M Sbjct: 26 RPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAM 85 Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475 DKKKVLVK HP+GK++VD+ +VDI+ + A RVALR ++Y +H++LP+KVDPLVSLMMV Sbjct: 86 DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 145 Query: 476 EKVPDSTYEMVGGLD 520 EKVPDSTYEMVGGLD Sbjct: 146 EKVPDSTYEMVGGLD 160 >AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical protein F56F11.4b protein. Length = 432 Score = 180 bits (437), Expect = 7e-46 Identities = 85/135 (62%), Positives = 107/135 (79%) Frame = +2 Query: 116 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 295 RPY+ TK+E+ + VAEKS N+RRL AQ+ ELN KVR+L+ GS+VGEV K M Sbjct: 47 RPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAM 106 Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475 DKKKVLVK HP+GK++VD+ +VDI+ + A RVALR ++Y +H++LP+KVDPLVSLMMV Sbjct: 107 DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 166 Query: 476 EKVPDSTYEMVGGLD 520 EKVPDSTYEMVGGLD Sbjct: 167 EKVPDSTYEMVGGLD 181 >Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical protein C52E4.4 protein. Length = 435 Score = 61.7 bits (143), Expect = 3e-10 Identities = 30/70 (42%), Positives = 40/70 (57%) Frame = +2 Query: 305 KVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 484 + L+ V KFVVDL +V D+ RV + Y +H LP K+DP V++M VE+ Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEK 171 Query: 485 PDSTYEMVGG 514 PD TY VGG Sbjct: 172 PDVTYSDVGG 181 >AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome regulatory particle,atpase-like protein 2 protein. Length = 443 Score = 57.6 bits (133), Expect = 5e-09 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Frame = +2 Query: 134 KIEELQLIVAEKSQNLRRLQAQ---RNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 304 +I++ L+ E QN RL+ Q + E AKV LR VG + + +D + Sbjct: 70 RIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMA-------VGSLEEIIDDQ 122 Query: 305 KVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 484 +V + + V++ VD + C V L ++++ + +L + DP+VS+M +EK Sbjct: 123 HAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKA 182 Query: 485 PDSTYEMVGGLD 520 P TY VGGLD Sbjct: 183 PQETYADVGGLD 194 >AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome regulatory particle,atpase-like protein 4, isoform b protein. Length = 398 Score = 56.8 bits (131), Expect = 9e-09 Identities = 33/115 (28%), Positives = 59/115 (51%) Frame = +2 Query: 173 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 352 Q L+ L+ + +E+ + G VGEV+K + ++K +VK ++VV Sbjct: 33 QKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGC 92 Query: 353 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 517 ++++ ++ RV+L + T+ + LP +VDPLV M E + +Y VGGL Sbjct: 93 RRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGL 147 >AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome regulatory particle,atpase-like protein 4, isoform a protein. Length = 406 Score = 56.8 bits (131), Expect = 9e-09 Identities = 33/115 (28%), Positives = 59/115 (51%) Frame = +2 Query: 173 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 352 Q L+ L+ + +E+ + G VGEV+K + ++K +VK ++VV Sbjct: 41 QKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGC 100 Query: 353 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 517 ++++ ++ RV+L + T+ + LP +VDPLV M E + +Y VGGL Sbjct: 101 RRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGL 155 >U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regulatory particle,atpase-like protein 3 protein. Length = 414 Score = 41.1 bits (92), Expect = 5e-04 Identities = 21/83 (25%), Positives = 41/83 (49%) Frame = +2 Query: 272 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 451 +G+ ++ +D+ +V + V + +D + C VAL S L +LP + D Sbjct: 85 IGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEAD 144 Query: 452 PLVSLMMVEKVPDSTYEMVGGLD 520 + ++ ++ PD +Y +GGLD Sbjct: 145 SSIQMLRPDEKPDISYGDIGGLD 167 >AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome regulatory particle,atpase-like protein 5 protein. Length = 430 Score = 33.1 bits (72), Expect = 0.12 Identities = 18/73 (24%), Positives = 34/73 (46%) Frame = +2 Query: 302 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 481 K ++K + + + VD +++ V + +SY + + LP + D V M V++ Sbjct: 111 KCAVIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 170 Query: 482 VPDSTYEMVGGLD 520 P Y +GG D Sbjct: 171 RPTEQYSDIGGCD 183 >Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical protein F36A2.9b protein. Length = 565 Score = 29.5 bits (63), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 275 GEVVKPMDKKKVLVKVHPEGKFVVDLDKN 361 G VV +D+K + + H EGKF+VD + N Sbjct: 16 GSVVPNVDQKILRGEFHDEGKFMVDYEDN 44 >Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical protein F36A2.9a protein. Length = 528 Score = 29.5 bits (63), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 275 GEVVKPMDKKKVLVKVHPEGKFVVDLDKN 361 G VV +D+K + + H EGKF+VD + N Sbjct: 16 GSVVPNVDQKILRGEFHDEGKFMVDYEDN 44 >Z80220-4|CAB02307.2| 566|Caenorhabditis elegans Hypothetical protein T08G11.4 protein. Length = 566 Score = 27.5 bits (58), Expect = 6.2 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 371 NDVTANCRVALRNESYTLHK-ILPNKVDPLVSLMMVEKVPDSTYE 502 N++T C V HK IL N ++ M+EK P+ST+E Sbjct: 155 NELTKQCEVMKPIYPIDQHKDILENPDYQQITKTMIEKNPESTFE 199 >Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein F22B5.7 protein. Length = 1415 Score = 27.5 bits (58), Expect = 6.2 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = +2 Query: 341 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520 V++ D N+++ + ANC + N T + V P++ EK P +V +D Sbjct: 351 VLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACID 410 >AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical protein F48G7.12 protein. Length = 435 Score = 27.5 bits (58), Expect = 6.2 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = -2 Query: 403 KSDTTIGRDIVNINVLV*IDDEFTFRMNFYEDLLFIHRFNHFSDVRSLFLQEL 245 K D + D+ N+L DE TF ++ D IH N D+ LFL L Sbjct: 272 KRDVMVHGDLWAANILWKEKDEGTFSVSKVIDYQLIHMGNPAEDLVRLFLSTL 324 >AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. Length = 1415 Score = 27.5 bits (58), Expect = 6.2 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = +2 Query: 341 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520 V++ D N+++ + ANC + N T + V P++ EK P +V +D Sbjct: 351 VLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACID 410 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,999,141 Number of Sequences: 27780 Number of extensions: 215878 Number of successful extensions: 691 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 691 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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