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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical pr...   203   7e-53
AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical ...   180   7e-46
AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical ...   180   7e-46
Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical pr...    62   3e-10
AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome re...    58   5e-09
AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome re...    57   9e-09
AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome re...    57   9e-09
U12965-4|AAA20608.1|  414|Caenorhabditis elegans Proteasome regu...    41   5e-04
AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome re...    33   0.12 
Z81077-9|CAD56582.1|  565|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81077-8|CAB03072.2|  528|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF039044-13|AAG24128.2|  435|Caenorhabditis elegans Hypothetical...    27   6.2  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   6.2  

>Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical
           protein Y49E10.1 protein.
          Length = 416

 Score =  203 bits (495), Expect = 7e-53
 Identities = 97/135 (71%), Positives = 111/135 (82%)
 Frame = +2

Query: 116 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 295
           R Y+ TK+++ Q  VA+KSQN+RRLQAQRNELN KVRML+         GSYVGEV K M
Sbjct: 31  RKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKAM 90

Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475
           DKKKVLVKVHPEGK+VVD+DK++DIN +    RVALR +SY LHK+LPNKVDPLVSLMMV
Sbjct: 91  DKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMV 150

Query: 476 EKVPDSTYEMVGGLD 520
           EKVPDSTYEMVGGLD
Sbjct: 151 EKVPDSTYEMVGGLD 165


>AF099922-3|AAK21407.2|  411|Caenorhabditis elegans Hypothetical
           protein F56F11.4a protein.
          Length = 411

 Score =  180 bits (437), Expect = 7e-46
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = +2

Query: 116 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 295
           RPY+ TK+E+ +  VAEKS N+RRL AQ+ ELN KVR+L+         GS+VGEV K M
Sbjct: 26  RPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAM 85

Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475
           DKKKVLVK HP+GK++VD+  +VDI+ + A  RVALR ++Y +H++LP+KVDPLVSLMMV
Sbjct: 86  DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 145

Query: 476 EKVPDSTYEMVGGLD 520
           EKVPDSTYEMVGGLD
Sbjct: 146 EKVPDSTYEMVGGLD 160


>AF099922-2|AAM48537.1|  432|Caenorhabditis elegans Hypothetical
           protein F56F11.4b protein.
          Length = 432

 Score =  180 bits (437), Expect = 7e-46
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = +2

Query: 116 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 295
           RPY+ TK+E+ +  VAEKS N+RRL AQ+ ELN KVR+L+         GS+VGEV K M
Sbjct: 47  RPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAM 106

Query: 296 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 475
           DKKKVLVK HP+GK++VD+  +VDI+ + A  RVALR ++Y +H++LP+KVDPLVSLMMV
Sbjct: 107 DKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMV 166

Query: 476 EKVPDSTYEMVGGLD 520
           EKVPDSTYEMVGGLD
Sbjct: 167 EKVPDSTYEMVGGLD 181


>Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical
           protein C52E4.4 protein.
          Length = 435

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 30/70 (42%), Positives = 40/70 (57%)
 Frame = +2

Query: 305 KVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 484
           + L+ V    KFVVDL  +V   D+    RV +    Y +H  LP K+DP V++M VE+ 
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEK 171

Query: 485 PDSTYEMVGG 514
           PD TY  VGG
Sbjct: 172 PDVTYSDVGG 181


>AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 2 protein.
          Length = 443

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
 Frame = +2

Query: 134 KIEELQLIVAEKSQNLRRLQAQ---RNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 304
           +I++  L+  E  QN  RL+ Q   + E  AKV  LR            VG + + +D +
Sbjct: 70  RIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMA-------VGSLEEIIDDQ 122

Query: 305 KVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 484
             +V  +   +  V++   VD   +   C V L ++++ +  +L +  DP+VS+M +EK 
Sbjct: 123 HAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKA 182

Query: 485 PDSTYEMVGGLD 520
           P  TY  VGGLD
Sbjct: 183 PQETYADVGGLD 194


>AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform b
           protein.
          Length = 398

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 33/115 (28%), Positives = 59/115 (51%)
 Frame = +2

Query: 173 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 352
           Q L+ L+ + +E+  +              G  VGEV+K + ++K +VK     ++VV  
Sbjct: 33  QKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGC 92

Query: 353 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 517
            ++++  ++    RV+L   + T+ + LP +VDPLV  M  E   + +Y  VGGL
Sbjct: 93  RRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGL 147


>AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform a
           protein.
          Length = 406

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 33/115 (28%), Positives = 59/115 (51%)
 Frame = +2

Query: 173 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 352
           Q L+ L+ + +E+  +              G  VGEV+K + ++K +VK     ++VV  
Sbjct: 41  QKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGC 100

Query: 353 DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 517
            ++++  ++    RV+L   + T+ + LP +VDPLV  M  E   + +Y  VGGL
Sbjct: 101 RRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGL 155


>U12965-4|AAA20608.1|  414|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 3 protein.
          Length = 414

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +2

Query: 272 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 451
           +G+ ++ +D+   +V       + V +   +D   +   C VAL   S  L  +LP + D
Sbjct: 85  IGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEAD 144

Query: 452 PLVSLMMVEKVPDSTYEMVGGLD 520
             + ++  ++ PD +Y  +GGLD
Sbjct: 145 SSIQMLRPDEKPDISYGDIGGLD 167


>AF067618-3|AAC19196.1|  430|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 5 protein.
          Length = 430

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 302 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 481
           K  ++K      + + +   VD +++     V +  +SY + + LP + D  V  M V++
Sbjct: 111 KCAVIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDE 170

Query: 482 VPDSTYEMVGGLD 520
            P   Y  +GG D
Sbjct: 171 RPTEQYSDIGGCD 183


>Z81077-9|CAD56582.1|  565|Caenorhabditis elegans Hypothetical
           protein F36A2.9b protein.
          Length = 565

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 275 GEVVKPMDKKKVLVKVHPEGKFVVDLDKN 361
           G VV  +D+K +  + H EGKF+VD + N
Sbjct: 16  GSVVPNVDQKILRGEFHDEGKFMVDYEDN 44


>Z81077-8|CAB03072.2|  528|Caenorhabditis elegans Hypothetical
           protein F36A2.9a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 275 GEVVKPMDKKKVLVKVHPEGKFVVDLDKN 361
           G VV  +D+K +  + H EGKF+VD + N
Sbjct: 16  GSVVPNVDQKILRGEFHDEGKFMVDYEDN 44


>Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical
           protein T08G11.4 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 371 NDVTANCRVALRNESYTLHK-ILPNKVDPLVSLMMVEKVPDSTYE 502
           N++T  C V         HK IL N     ++  M+EK P+ST+E
Sbjct: 155 NELTKQCEVMKPIYPIDQHKDILENPDYQQITKTMIEKNPESTFE 199


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 341 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
           V++ D N+++  + ANC   + N   T  +     V P++     EK P     +V  +D
Sbjct: 351 VLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACID 410


>AF039044-13|AAG24128.2|  435|Caenorhabditis elegans Hypothetical
           protein F48G7.12 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 403 KSDTTIGRDIVNINVLV*IDDEFTFRMNFYEDLLFIHRFNHFSDVRSLFLQEL 245
           K D  +  D+   N+L    DE TF ++   D   IH  N   D+  LFL  L
Sbjct: 272 KRDVMVHGDLWAANILWKEKDEGTFSVSKVIDYQLIHMGNPAEDLVRLFLSTL 324


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 341 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
           V++ D N+++  + ANC   + N   T  +     V P++     EK P     +V  +D
Sbjct: 351 VLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACID 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,999,141
Number of Sequences: 27780
Number of extensions: 215878
Number of successful extensions: 691
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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