Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A08f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 194 3e-50
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 193 7e-50
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 64 4e-11
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 64 5e-11
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 59 2e-09
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 56 1e-08
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 51 5e-07
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 51 5e-07
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 38 0.003
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 33 0.12
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 33 0.15
At1g60700.1 68414.m06833 forkhead-associated domain-containing p... 30 1.1
At3g29185.2 68416.m03659 expressed protein 27 5.8
At3g29185.1 68416.m03658 expressed protein 27 5.8
At3g24880.1 68416.m03120 expressed protein 27 5.8
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 27 7.7
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 27 7.7
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 194 bits (473), Expect = 3e-50
Identities = 91/140 (65%), Positives = 111/140 (79%)
Frame = +2
Query: 101 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 280
+GEG YY+ ++ELQ + EKS NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 281 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 460
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 461 SLMMVEKVPDSTYEMVGGLD 520
+LM VEKVPDSTY+M+GGLD
Sbjct: 148 NLMKVEKVPDSTYDMIGGLD 167
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 193 bits (470), Expect = 7e-50
Identities = 90/140 (64%), Positives = 111/140 (79%)
Frame = +2
Query: 101 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 280
+GEG + YY+ I ELQ + +K+ NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 281 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 460
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 461 SLMMVEKVPDSTYEMVGGLD 520
+LM VEKVPDSTY+M+GGLD
Sbjct: 148 NLMKVEKVPDSTYDMIGGLD 167
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 64.5 bits (150), Expect = 4e-11
Identities = 38/126 (30%), Positives = 67/126 (53%)
Frame = +2
Query: 140 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 319
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 320 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 499
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 500 EMVGGL 517
VGGL
Sbjct: 139 SAVGGL 144
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 64.1 bits (149), Expect = 5e-11
Identities = 38/126 (30%), Positives = 67/126 (53%)
Frame = +2
Query: 140 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 319
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 320 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 499
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 500 EMVGGL 517
VGGL
Sbjct: 139 SAVGGL 144
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 58.8 bits (136), Expect = 2e-09
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 278 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 454
+++ P + K +V + GK+VV L D+ A RV + + Y + LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 455 LVSLMMVEKVPDSTYEMVGG 514
V++M VE+ PD+TY +GG
Sbjct: 190 SVTMMTVEEKPDATYSDIGG 209
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 278 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 454
+++ P + K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 455 LVSLMMVEKVPDSTYEMVGG 514
V++M VE+ PD TY VGG
Sbjct: 153 SVTMMTVEEKPDVTYNDVGG 172
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 50.8 bits (116), Expect = 5e-07
Identities = 40/152 (26%), Positives = 76/152 (50%)
Frame = +2
Query: 65 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 244
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 245 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 424
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 425 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
IL ++VDP+VS+M VEK P +Y +GGL+
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLE 194
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 50.8 bits (116), Expect = 5e-07
Identities = 40/152 (26%), Positives = 76/152 (50%)
Frame = +2
Query: 65 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 244
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 245 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 424
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 425 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
IL ++VDP+VS+M VEK P +Y +GGL+
Sbjct: 163 VGILQDEVDPMVSVMKVEKAPLESYADIGGLE 194
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +2
Query: 272 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 451
+G+ ++ +D+ +V + V + ++ + + VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 452 PLVSLMMVEKVPDSTYEMVGGLD 520
+SL+ + PD +Y +GG D
Sbjct: 139 SSISLLSQSEKPDVSYNDIGGCD 161
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 362 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
VD + + V + +SY + LP++ D V M V++ P Y +GGL+
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 177
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 362 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 520
VD + + V + +SY + LP++ D V M V++ P Y +GGL+
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 176
>At1g60700.1 68414.m06833 forkhead-associated domain-containing
protein / FHA domain-containing protein contains
similarity to nucleolar protein GI:2384719 from [Mus
musculus]
Length = 525
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 347 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 457
DLD N DI D + R LR ES + ++ N DPL
Sbjct: 64 DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101
>At3g29185.2 68416.m03659 expressed protein
Length = 411
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 263 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 352
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At3g29185.1 68416.m03658 expressed protein
Length = 433
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 263 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 352
G V ++ D+KKV VH EGK DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 204 MNSTLKFVCCARSCSSCKNRDR 269
MNSTLK C R+ + CK+R +
Sbjct: 1079 MNSTLKIKCIYRNPTECKDRHK 1100
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = +2
Query: 392 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDST 496
++ ++++Y+ K+ P+KVD + +++ + + DST
Sbjct: 443 QIKKKSDAYSFFKVEPSKVDRVYDMLVHKGIGDST 477
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = +2
Query: 392 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDST 496
++ ++++Y+ K+ P+KVD + +++ + + DST
Sbjct: 514 QIKKKSDAYSFFKVEPSKVDRVYDMLVHKGIGDST 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,309,121
Number of Sequences: 28952
Number of extensions: 194909
Number of successful extensions: 540
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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