Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    29   2.7  
Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF099915-10|AAC68767.1|  149|Caenorhabditis elegans Hypothetical...    27   8.1  

>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 60  YIPYQIYLRLASRLTVGSSIRVAMWMRSGSLTSSETKIS 176
           Y PYQI++  +S L  GSS+      RS  +  ++ KI+
Sbjct: 107 YAPYQIFIIYSSILCTGSSMIYLFESRSSGIPENKYKIT 145


>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 495 YSFFYKQNSQSAS*FCQIICTLVS*YLRESYQGNYN 388
           Y+   KQN Q  +   Q+I TL+   +R++Y  N N
Sbjct: 332 YNSILKQNHQDDAVLFQVITTLLDQVIRQNYYLNLN 367


>AF099915-10|AAC68767.1|  149|Caenorhabditis elegans Hypothetical
           protein E02H9.1 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 63  IPYQIYLRLASRLTVGSSIRVAMWMRSGSL 152
           + YQI L L S L +  SIR + W  SG L
Sbjct: 2   VSYQILLLLVSILPLTYSIRTSKWHFSGKL 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,166
Number of Sequences: 27780
Number of extensions: 184059
Number of successful extensions: 308
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)