Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15233.1 68417.m02334 ABC transporter family protein similar ...    30   1.1  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    27   5.8  
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    27   7.7  

>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 99  LTVGSSIRVAMWMRSGSLTSSETKISILSNI 191
           LTV  S++ + W+R  S  SSETK +I++ +
Sbjct: 809 LTVQESLKYSAWLRLTSNISSETKCAIVNEV 839


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 99  LTVGSSIRVAMWMRSGSLTSSETKISILSNI 191
           LTV  S++ + W+R     SSETK +I++ +
Sbjct: 888 LTVQESLKYSAWLRLPCNISSETKSAIVNEV 918


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 217 NVEDFFVA*IFDKMLILVSLDVNDPERIHIATRMLLPTVRREANLK 80
           NV D     + D+M ++        E++HIA   L  T RR+  +K
Sbjct: 574 NVTDTIPGPLLDRMEVITLSGYITDEKMHIARDYLEKTARRDCGIK 619


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,163,049
Number of Sequences: 28952
Number of extensions: 153171
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)