Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    28   0.73 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.3  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.0  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   6.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.0  

>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 244 RKSDDVLVLSIRIIQFVDGSKAFGRWNFCYYNHSQ*WYICSSTRFVNY 387
           R SD  +V+S  I + V  S A    + C  +  + W++ +S  F+N+
Sbjct: 95  RVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHVRASVHFINH 142


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 305 FDPSTNCIIRILKTRTSSLFLIRILSNKRRKQDFYYD 195
           F P   C I I +TRTS  F      + R  +D YY+
Sbjct: 30  FGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYE 66


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 209 DFYYDESIYLYVVCQSNILSQILTLY 132
           + YY ES Y+ +VC   I+ + +T +
Sbjct: 36  ELYYGESFYINIVCSRPIVDENVTTW 61


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 412 NRVLFFVEDNSQTAWRNICTITEN 341
           N V++F+E+NS+     +  +T+N
Sbjct: 309 NAVIYFLEENSEIVLNTLYAVTKN 332


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 277 RIIQFVDGSKAFGRWNF 327
           +II  ++GSK +G+W F
Sbjct: 538 KIIDTLEGSKKYGKWAF 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,374
Number of Sequences: 5004
Number of extensions: 41672
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)