Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      27   9.4  
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 430 IXXVYINRVLFFVEDNSQTAWRNIC-TITENDYNNK 326
           I  V+I   LFFV D  +TAWR  C T   N+ + K
Sbjct: 171 IAFVFIVGPLFFVMDLEETAWRKDCLTKWPNEVSKK 206


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 311 KAFDPSTNCIIRILK-TRTSSLFLIRILSNKRRKQDFYYDESIYLYVVCQS 162
           K   PS++   RI    R S LF +  ++  RR     YD  +  Y+VC+S
Sbjct: 45  KILTPSSSGSSRIRTLNRRSRLFKLHYINLNRRDDVISYDVVLGYYIVCRS 95


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 287  CIIRILKTRTSSLFLIRILSNKRRKQDF--YYDESIYLYVVCQSN 159
            C++ I K    S+ L RI  N RRK++   ++DE+     + + N
Sbjct: 951  CVLEIEKRGLESVGLYRISGNARRKKELRGFFDENSEAVDISEEN 995


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = -3

Query: 519  SSCDFGFYESLASLTSDVKEL---SY-KTMFLRK*XKCTLTECCFL*KII-HKPRGGTYV 355
            SSC +  YE+L ++ S  K +   +Y ++       K T+TE     KII H P     +
Sbjct: 1254 SSCHYDGYENLLTVLSGQKVVLLANYSQSELFHLDLKKTVTE-----KIIPHAPLNPEAI 1308

Query: 354  PLLRMIIITKIPTAKGF 304
             L+RM  + KIP  K F
Sbjct: 1309 DLMRMPNLAKIPFHKNF 1325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,541
Number of Sequences: 59808
Number of extensions: 275338
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)