Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   5.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 515 VVISGFTSHWLHLQATS 465
           +V+  + S W+H +ATS
Sbjct: 258 IVVLSWVSFWIHREATS 274


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 311 LAVGIFVIIIILSN 352
           LAVG+F ++++L+N
Sbjct: 8   LAVGLFGVLLLLTN 21


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 515 VVISGFTSHWLHLQAT 468
           +V+  + S WLH+ A+
Sbjct: 245 IVVISWVSFWLHMDAS 260


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 275 ILKTRTSSLFLIRILSNK 222
           +LK++   +FLI IL +K
Sbjct: 348 VLKSKIGQVFLITILDSK 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,316
Number of Sequences: 438
Number of extensions: 2981
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)