Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    29   0.42 
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    28   0.73 
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   3.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   3.0  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   3.0  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   3.9  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   5.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   6.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   6.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   6.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   9.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.0  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   9.0  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 57  VPGDSTINRIVTCTGTTILSSRNMLYDYPAVRRDET--VVDDYHGTKIKDPYRWLEDPDS 230
           +P  +T +R    +     +S   +YD PA + + T  V+D++  T+I D     E+ DS
Sbjct: 3   IPDSTTDSRHSLSSAALSSASFENIYD-PARKNESTNDVIDNHTDTEIDDHDNDHENLDS 61

Query: 231 NETKEFVEAQNK 266
           N   E  EA N+
Sbjct: 62  NNNNENNEAFNE 73


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = +3

Query: 12  PSIHHHLHTIKRPVYVPGDSTI----NRIVTCTGTTILSSRNMLY--DYPAVRRDETVVD 173
           P IH H+  +KR + VPG   +    N ++   G T        +  D+   R ++ V +
Sbjct: 351 PPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFDPKRWNDRVNE 410

Query: 174 DYHGTKIKDPY 206
           D +  +I   Y
Sbjct: 411 DENAEQIDYGY 421


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 63  GDSTINRIVTCTGTTILSSRNMLYDYPAVRRDE--TVVDDYHGTKIKD 200
           GD TIN   TC   T    R+MLY    V R+    + D+ H  + K+
Sbjct: 273 GDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE 320


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +3

Query: 183 GTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINERLTELWNYPKYSCPF 362
           G  + D    + +PDS E     +    + R  L   P+Q +    LTELWN   +  P 
Sbjct: 436 GYCVLDEGHKIRNPDS-EISISCKQIRTVNRIILSGTPIQNN----LTELWNLFDFVFPG 490

Query: 363 RKGSRYFFFKNTGLQNQNALYVQDG 437
           R G+   F      QNQ AL +  G
Sbjct: 491 RLGTLPVF------QNQFALPINIG 509


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 204 YRWLEDPDSNETKEFVEAQNKITRPYLDA 290
           ++ LE    N  KE+++    I  PY DA
Sbjct: 56  FKQLESTSKNNAKEYMKLSKVIVHPYKDA 84


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 6   NTPSIHHHLHTIKRPVYVP--GDSTINRIVTCTGTTILSSRNMLYDYPAVRRDE 161
           NT +  +  + +  P Y    GD++I+   +  G  IL   + LYDY A   +E
Sbjct: 572 NTKATGNTSNRLSLPAYPTDGGDTSIDNPTSTDGQRILGYVSALYDYDAAIPEE 625


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 156 DETVVDDYHGTKIKDPY---RWLEDPDSNETKEFVE 254
           D+  +D Y      DP    +WLE+P++ E KE +E
Sbjct: 376 DDRYIDVYAHPIGADPVLVDKWLENPETLEVKEVLE 411


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 120 RNMLYD-YPAVRRDETVVDDYHGTKIKDPYRW 212
           RN L + Y A++ +E +V + H T++   Y W
Sbjct: 717 RNFLSEIYKAIKENEIIVAEEHDTELSFLYIW 748


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 30  LHTIKRPVYVPGDSTINRIVTCTGTTI 110
           + T+K P +   +   NR+V C G T+
Sbjct: 829 VQTVKVPTFPSDNCETNRVVICWGATL 855


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 337 FHSSVSLSLIDFCTGHASKYGRVILF*ASTNSLVSFESGSSSQ 209
           +HS+++ S   F  G +SK   +    A+ +  VSF   S+S+
Sbjct: 158 YHSNLATSSNPFSDGSSSKSASLTASSAAASPTVSFSPASTSE 200


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 138 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKE 245
           YPA   + T VDD +  + KD      D D N++ E
Sbjct: 21  YPAENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSE 56


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 96  TGTTILSSRNMLYDYPAVRRDETVVDDYHG 185
           T TT+      +   P+V+R  ++ +D+HG
Sbjct: 599 TITTVHKKHGSVDHLPSVKRRRSIANDFHG 628


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 249  VEAQNKITRPYLDACPVQKSINERLTELWNYPKYSCPF 362
            ++ Q ++ + Y+    +QK     LTE  +Y  Y CPF
Sbjct: 933  LDTQRRVWKKYVQNYRIQK-----LTEEISYKNYRCPF 965


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 352 HAPSGRAADTSSSRTPVCRTKMRCTCKMVST 444
           H P+G  +D   + T       RC C +V +
Sbjct: 28  HTPNGSVSDNEENETSSTGEVTRCVCGIVES 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,467
Number of Sequences: 5004
Number of extensions: 43389
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)