Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 157 4e-39
04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838... 90 9e-19
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716... 33 0.18
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 29 2.3
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 4.0
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 27 6.9
12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189 27 9.1
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529... 27 9.1
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 27 9.1
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 27 9.1
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 27 9.1
03_01_0060 - 487802-487882,487962-488195,488570-488629 27 9.1
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 157 bits (382), Expect = 4e-39
Identities = 67/123 (54%), Positives = 91/123 (73%)
Frame = +3
Query: 138 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 317
YP RRD +VVD YHG + DPYRWLEDP+S +TKEFV +Q ++ L C ++++
Sbjct: 13 YPPTRRDNSVVDMYHGVPVADPYRWLEDPESEDTKEFVASQVELAESVLAGCFDRENLRR 72
Query: 318 RLTELWNYPKYSCPFRKGSRYFFFKNTGLQNQNALYVQDGLDGEPRVFLDPNTLSEDGTV 497
+T L+++P++ PFR+G++YF+F N+GLQ Q+ LYVQD LDGE V LDPN LS+DGTV
Sbjct: 73 EVTRLFDHPRHGAPFRRGNKYFYFHNSGLQAQSVLYVQDSLDGEAEVLLDPNALSKDGTV 132
Query: 498 ALS 506
ALS
Sbjct: 133 ALS 135
>04_04_0790 +
28083116-28083337,28083446-28083652,28083739-28083809,
28083898-28084063,28084189-28084788,28084928-28085323
Length = 553
Score = 90.2 bits (214), Expect = 9e-19
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = +3
Query: 213 LEDPDSNETKEFVEAQNKITRPYLDACPVQK-SINERLTELWNYPKYSCPFRKGSRYFFF 389
+E+ +S E K FV+AQ + L C + + +LT L+++P+Y PF++ YF+
Sbjct: 1 MEELESEEVKGFVDAQAAVAEAVLSTCDDHRVRLRGQLTALFDHPRYRAPFKRAGSYFYL 60
Query: 390 KNTGLQNQNALYVQDGLDG--EPRVFLDPNTLSEDGTVALS 506
N GLQ +ALYVQ GL G EP V LDPNT S+D TV+L+
Sbjct: 61 HNPGLQPHSALYVQHGLGGGEEPDVLLDPNTFSDDATVSLA 101
>09_04_0503 -
18170645-18170858,18171029-18171222,18171419-18171629,
18172162-18172553,18172926-18173054,18173353-18173487,
18173885-18174088,18174716-18174771,18174793-18174950,
18175864-18176231
Length = 686
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 141 PAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDA 290
P V + HG DPY W+ D + +EA+N ++D+
Sbjct: 40 PPVAKKVPFTASAHGRSWSDPYHWMRDTSDPDLAALLEAENAYADAFVDS 89
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 9 TPSIHHHLHTIKRPVYVPGDSTINRIVTCTGTTILSSRNMLYDYPAVRRDET---VVDDY 179
TPS+ +HL K P Y G+ I+ G I N L +DET V D+
Sbjct: 390 TPSVSYHLMNNKNPKYRNGNLVISSESLSHGLRIFQESNDLGKDTVEAKDETEMVVPDNE 449
Query: 180 HGTKIK 197
+ KI+
Sbjct: 450 YEKKIR 455
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 276 PYLDACPVQKSINERLTELWNYPKYSCPFRKG-SRYFFFKNTGLQNQNALYVQDGLDGEP 452
P + P Q S+ L+ L + S P +KG S + N ++N+ A QD P
Sbjct: 2010 PCISCQPPQLSL-AALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQD-----P 2063
Query: 453 RVFLDPNTLSEDGT 494
+ +DP TL EDGT
Sbjct: 2064 EMEVDPWTLLEDGT 2077
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 121 LEDNIVVPVQVTILLIVESPGTYTGLLIVCK*WCMLG 11
L D++VV + + SPG G ++ CK + LG
Sbjct: 54 LPDDLVVSILADVAASARSPGDLAGAMLTCKRFRELG 90
>12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189
Length = 500
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 216 EDPDSNETKEFVEAQNKITRPYLDACPVQKSINERLTELW 335
EDPD +F N+ R + +A Q++ NE+ + W
Sbjct: 219 EDPDDGNVWQFGNPGNQGAREWDEAVQQQQAANEQQEDAW 258
>11_06_0676 +
26152192-26152367,26152669-26152708,26152857-26152966,
26153886-26153934,26154157-26154206,26154606-26155150,
26155583-26155743,26156231-26156440,26156525-26156690,
26156765-26156869,26157465-26157760
Length = 635
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 207 RWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 317
+WL+D N +EFV+A NK + C K N+
Sbjct: 351 KWLKDNQINTVEEFVKALNKDEEKIRNECFKLKKDNK 387
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 325 RNCGTTLNIHAPSGRAADTSSSRTPVCRTKMRCTCKMVSTANLA 456
RNCG GR A T+ P+ R RC ++ ++A
Sbjct: 393 RNCGEIFCDKCSQGRTALTAEDNAPLVRVCDRCMAEVSQRLSIA 436
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 246 FVEAQNKITRPYLDACPVQKSINERLTELWN 338
F+E N T LD +QK+I+ERL WN
Sbjct: 210 FIEVSNSET---LDTLEMQKTISERLNLPWN 237
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 295 PCRNRSTRG*RNCGTTLNIHAPSGRAADTSSS 390
PC N S RG CG L H SGRA T+++
Sbjct: 28 PCANPSHRGAPPCGAALWRH-HSGRAVTTAAA 58
>03_01_0060 - 487802-487882,487962-488195,488570-488629
Length = 124
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 464 QEHARFAVETILHVQRILVLQTGVLEEEVSAALPEGA*IFR 342
+E A + ET HVQRIL+ ++VS L G +F+
Sbjct: 72 EEVAAASAETEEHVQRILLAIDAFTRQQVSEMLEAGRALFK 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,580
Number of Sequences: 37544
Number of extensions: 275775
Number of successful extensions: 844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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