Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12552| Best HMM Match : Peptidase_S9_N (HMM E-Value=1.3e-09)       195   2e-50
SB_33688| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   1e-17
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)                   29   3.1  
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)                 28   4.1  
SB_56638| Best HMM Match : DAGK_cat (HMM E-Value=7.8e-19)              28   5.4  
SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   27   7.1  
SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_25927| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             27   9.4  

>SB_12552| Best HMM Match : Peptidase_S9_N (HMM E-Value=1.3e-09)
          Length = 216

 Score =  195 bits (475), Expect = 2e-50
 Identities = 84/128 (65%), Positives = 100/128 (78%)
 Frame = +3

Query: 138 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 317
           YP VRRD    D+YHGTKI +PY WLEDPDS+ETK FV+AQN IT PYL  C V++   +
Sbjct: 9   YPKVRRDSQHFDEYHGTKIAEPYIWLEDPDSDETKAFVKAQNDITLPYLAECEVREKFKD 68

Query: 318 RLTELWNYPKYSCPFRKGSRYFFFKNTGLQNQNALYVQDGLDGEPRVFLDPNTLSEDGTV 497
           RLTELW+YPKY CPF++GSRYF+F N+GLQNQ+ LYVQ+ LDGE  VFLDPN + EDGT 
Sbjct: 69  RLTELWDYPKYGCPFKRGSRYFYFYNSGLQNQSVLYVQESLDGEAHVFLDPNKIKEDGTA 128

Query: 498 ALSGTKFT 521
           AL G  F+
Sbjct: 129 ALRGHTFS 136


>SB_33688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 37/60 (61%), Positives = 44/60 (73%)
 Frame = +3

Query: 138 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 317
           YP VRRD    D+YHGTKI +PY WLEDPDS+ETK FV+AQN IT PYL  C V++   +
Sbjct: 9   YPKVRRDSQHFDEYHGTKIAEPYIWLEDPDSDETKAFVKAQNDITLPYLAECEVREKFKD 68


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 340 TLNIHAPSGRAADTSSSRTPVCRTKMRCTCKMVSTANLACSWTRTLCPKTARWRFPVQSS 519
           T NI+ P  +A+  +  R  V  TK    C + +  N AC    T  PK A+ +  VQS+
Sbjct: 477 TSNIYEPLAKASQATKQR--VLSTKSTQQCVVTNDNNYACLKANTADPKVAKSKELVQSA 534


>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
          Length = 133

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 421 CTCKMVSTANLACSWTRTLCPKTARWRFP 507
           C C ++ST + AC+W   +   T  WR P
Sbjct: 25  CMCNVLSTYSKACAWNHNI---TLSWRSP 50


>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
          Length = 484

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 340 TLNIHAPSGRAADTSSSRTPVCRTKMRCTCKMVSTANLACSWTRTLCPKTA 492
           T+  +A +G A  T  S   VC  K  C    + TA  +C W    CP T+
Sbjct: 112 TIRWNARNGNATQTPDS---VCNHK--CPAGTMQTATKSCCWQCLECPHTS 157


>SB_56638| Best HMM Match : DAGK_cat (HMM E-Value=7.8e-19)
          Length = 836

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 245 FFGF-IRIWIFEPTVWIFDLSSMIVVDDGF 159
           + GF ++ WI +P++WI D SSM   D GF
Sbjct: 74  YSGFQLKSWIPDPSLWISDSSSM---DSGF 100


>SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 239 GF-IRIWIFEPTVWIFDLSSMIVVDDGF 159
           GF ++ WI +P+VWI D SSM   D GF
Sbjct: 495 GFQLKSWIPDPSVWIPDSSSM---DSGF 519


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 429 QDGLDGEPRVFLDPNTLSEDGTV 497
           Q G+DGEP  F++   +++DGT+
Sbjct: 150 QPGVDGEPIRFMNDLDIAQDGTI 172


>SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 342 PKYSCPFRKGSRYFFFKNTGLQNQ 413
           PKY  P+  G RYF  K  GLQN+
Sbjct: 132 PKYKEPYGFGVRYFILKQ-GLQNK 154


>SB_25927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 204 YRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINERLTELWNYPKYSCPFRK 368
           ++WL      + KEF    N+I   +   C V  + NERL EL    ++S   RK
Sbjct: 154 HKWLFYCSKKKKKEFALQSNQIKPEFWPICRVHTARNERL-ELIRKLEHSFQERK 207


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 135  DYPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSIN 314
            D  A   D+  VDD  G+   D   W E  DS++    V+       P ++ C  Q   +
Sbjct: 1236 DVNASSDDDDNVDD-DGS---DDDLWFEGEDSDDETNDVDVA-----PVINECSPQSMSD 1286

Query: 315  ERLTELWNYPK 347
               T +W YPK
Sbjct: 1287 LNKTYIWKYPK 1297


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 224 WIFEPTVWIFDLSSMIVVDDGFVT-PHRWIVIQH 126
           W+     W+F L+  +V+ + +V   ++W+VI++
Sbjct: 386 WVVTHNKWVFTLNKWVVIRNKWVVIRNKWVVIRN 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,819
Number of Sequences: 59808
Number of extensions: 321195
Number of successful extensions: 1145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)