Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -1

Query: 251 DEFFGFIRIWIFEPTVWIFDLSSMI 177
           D+ +GF+ + +    +WIF ++S++
Sbjct: 475 DQDWGFVAMVLDRLFLWIFTIASIV 499


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = +3

Query: 213 LEDPDSNETKEFVEAQNKI 269
           +ED D N+ + +++A++ +
Sbjct: 566 IEDADKNQCRHYLDAKSSV 584


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 127  IFLED-NIVVPVQVTILLIV 71
            IF+ + N+VVPV   IL+I+
Sbjct: 1580 IFMANLNLVVPVVAAILVII 1599


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 87  VTCTGTTILSSRNM 128
           +TC G T + SRN+
Sbjct: 12  ITCQGVTDIHSRNL 25


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 3   KNTPSIHHHLHTIKRP 50
           K   S+H  +HT +RP
Sbjct: 132 KENLSVHRRIHTKERP 147


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 72  TINRIVTCTGTTILS 116
           T+N I+ C G T L+
Sbjct: 253 TVNLIIPCVGITFLT 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,434
Number of Sequences: 438
Number of extensions: 3156
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)