Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...   176   6e-45
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly...   160   6e-40
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    31   0.36 
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica...    30   0.82 
At4g16440.1 68417.m02488 iron hydrogenase family protein contain...    29   1.9  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    29   2.5  
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si...    27   5.8  
At5g50110.1 68418.m06205 methyltransferase-related contains weak...    27   7.7  
At5g15510.1 68418.m01816 expressed protein                             27   7.7  
At1g50950.1 68414.m05728 thioredoxin-related contains weak hit t...    27   7.7  
At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase fa...    27   7.7  

>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score =  176 bits (429), Expect = 6e-45
 Identities = 74/123 (60%), Positives = 97/123 (78%)
 Frame = +3

Query: 138 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 317
           YPA RRD++VVDDYHG KI DPYRWLEDPD+ E KEFV++Q K+T   L+ C  ++ + +
Sbjct: 13  YPATRRDDSVVDDYHGVKIGDPYRWLEDPDAEEVKEFVQSQVKLTDSVLEKCETKEKLRQ 72

Query: 318 RLTELWNYPKYSCPFRKGSRYFFFKNTGLQNQNALYVQDGLDGEPRVFLDPNTLSEDGTV 497
            +T+L ++P+Y  PFR+G +YF+F NTGLQ Q+ LY+QD LD EP V LDPNTLS+DGTV
Sbjct: 73  NITKLIDHPRYDSPFRQGDKYFYFHNTGLQAQSVLYMQDNLDAEPEVLLDPNTLSDDGTV 132

Query: 498 ALS 506
           AL+
Sbjct: 133 ALN 135


>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|P48147 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Homo
           sapiens}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score =  160 bits (388), Expect = 6e-40
 Identities = 64/123 (52%), Positives = 94/123 (76%)
 Frame = +3

Query: 138 YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 317
           YP  RRDE+VV+DYHG K+ DPYRWLEDPD+ E KEFVE Q +++   L +C  ++ +++
Sbjct: 13  YPTARRDESVVEDYHGVKVSDPYRWLEDPDAEEVKEFVEKQVQLSDSVLKSCETKEKLHD 72

Query: 318 RLTELWNYPKYSCPFRKGSRYFFFKNTGLQNQNALYVQDGLDGEPRVFLDPNTLSEDGTV 497
           + T+  +YP++  PF++G+ YF+F N+GLQ Q+ L+VQD L+ E  + LDPNTLS+DGTV
Sbjct: 73  KFTKFIDYPRFDTPFKRGNSYFYFHNSGLQAQSVLHVQDDLESEAEILLDPNTLSDDGTV 132

Query: 498 ALS 506
           +L+
Sbjct: 133 SLN 135


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 12/57 (21%), Positives = 30/57 (52%)
 Frame = +3

Query: 114 SSRNMLYDYPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYL 284
           SS ++  + P V +        HG   +DP+ W+++ D  +  +F++ +N  ++ ++
Sbjct: 31  SSLSVPTEAPPVPKKIPFAISSHGITRQDPFHWMKNTDDTDFVDFLKRENSYSQAFM 87


>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1090

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +3

Query: 171 DDYHGTK----IKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINERLTELWN 338
           DD  G K    I D    +++P++   K  +E  +   R  +   P+Q +    L ELW 
Sbjct: 502 DDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSS-HRIIISGTPIQNN----LKELWA 556

Query: 339 YPKYSCPFRKGSRYFFFKN 395
              +SCP   G + +F +N
Sbjct: 557 LFNFSCPGLLGDKNWFKQN 575


>At4g16440.1 68417.m02488 iron hydrogenase family protein contains
           Pfam profiles: PF02906 Iron only hydrogenase large
           subunit, C-terminal domain, PF02256 Iron hydrogenase
           small subunit
          Length = 451

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 114 SSRNMLYDYPAVRRDETVV--DDYHGTKIKDPYR-WLEDPDSNETKEFVEAQ 260
           S + +++   A   ++T +  D Y     K  +  WL++P SNE K+++  Q
Sbjct: 385 SQKELIHSLEATYMNDTTLNTDPYQNPTAKRLFEEWLKEPGSNEAKKYLHTQ 436


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 275 TRYLVLSLDEFFGFIRIWIFEPTVWIFDLSSMIVVDDGFVTPHRW 141
           T+Y+ L + E    +  W+  P++++FD S+  ++ + F   H W
Sbjct: 221 TQYIPLPISE----LDSWLKTPSIYVFDCSAARMILNAFAELHDW 261


>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
           similarity to RNA helicase/RNAseIII CAF protein
           [Arabidopsis thaliana] GI:6102610; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1324

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 136 SYSIFLEDNIVVPVQVTILLIVESPGTYT 50
           SY + + + + VP+Q+ IL +  +PG+ T
Sbjct: 248 SYCVVVRELMAVPIQLRILALTATPGSKT 276


>At5g50110.1 68418.m06205 methyltransferase-related contains weak
           similarity to Methyltransferase gidB (EC 2.1.-.-)
           (Glucose inhibited division protein B).
           (Swiss-Prot:Q93D95) [Streptococcus mutans]
          Length = 208

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 150 SPLDSHTAYSLRTILSCR 97
           SP+DSH+ Y  RT + CR
Sbjct: 170 SPVDSHSPYGQRTTVVCR 187


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 206 PLARRSRFE*NQRIRRGSEQDNASV 280
           P+  RS+F+ NQ+I R SE  N ++
Sbjct: 14  PVKDRSKFQSNQKISRSSENANPNI 38


>At1g50950.1 68414.m05728 thioredoxin-related contains weak hit to
           Pfam PF00085: Thioredoxin; contains 2 predicted
           transmembrane domains
          Length = 484

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +3

Query: 39  IKRPVYVPG--DSTINRIVTCTGTTILSSRNMLYDYPAVR--RDETVVDDYHGTKIKDPY 206
           I R  Y PG  D  +   V CT    L   N +  YP++R  R  + + + HG    + Y
Sbjct: 187 ITRERYNPGTDDRVLLGSVDCTEEPTLCKSNHIQGYPSIRIFRRGSGLREDHGNHEHESY 246

Query: 207 RWLEDPDS 230
               D DS
Sbjct: 247 YGDRDTDS 254


>At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 649

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  KRPVYVPGDSTINRIVTCTGTTILSSRNMLY-DYPAVRRDETVVDDYHGTKIKDPYRWLE 218
           KRPV+     ++   + CT + I+ SR++L+  +PA+  D   + D    ++ + +R + 
Sbjct: 262 KRPVHYDTVLSVLGFLKCTSSPIVESRDLLFRAFPAM--DPADISDQVVREVDELFR-VN 318

Query: 219 DPDSNETKEFVEAQNKITRPYLDACPVQ 302
           +  +NE +    +Q     P L + P+Q
Sbjct: 319 EHAANENR---SSQILEVFPTLSSLPMQ 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,812
Number of Sequences: 28952
Number of extensions: 223230
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)