Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    62   6e-11
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    48   8e-07
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    34   0.011
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   3.0  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.8  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   9.0  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.0  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +1

Query: 1   GTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
           GTAQQPRLFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 119 GTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +1

Query: 10  QQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
           +Q R+FV M+LILIFAEVLGLYGLIV + L
Sbjct: 124 RQDRIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 7   AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
           AQ   LFV ++++ IF  VLGL+GLIV + +
Sbjct: 161 AQDASLFVKVLVVEIFGSVLGLFGLIVGLLI 191



 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 1   GTAQQPRLFVGMILILIFAEVLGLYGLIVAI 93
           G  + PR+    ++ +IF EV+ +Y LI+AI
Sbjct: 75  GAVKAPRIKTKNLISIIFCEVVAIYSLIIAI 105


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 230 FRSTLPLLYITFVPCSFSHISRPVQ-PCCCGCSASRDVNLYIFTKNFL*KRSNLNHGFIE 406
           FR+ LP  Y  F P + +H+ RP + P   G S S       FT     +   L  GF  
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPE---EDERLLEGFFL 157

Query: 407 H-ECYRAMTPQFNL 445
           H  C+  ++   NL
Sbjct: 158 HGPCWTRISKDANL 171


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 105 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSST 1
           C++VD +D K +  K+QY +EN N N  +  P L S+T
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNT 269


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 62  YWVFTDLSSPSTCTQNKRPEHTPLPSP 142
           YW +T  +SP+   +N R    P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 313 ATRLHRSGDM*KRAGNKCNIQEWKGAPKPYARWTRYRRRPSLC 185
           A+ + +SG     AG    I+ WK    P  R T  +  P  C
Sbjct: 191 ASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSC 233


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 267 FPARFHISPDRCSLVAAAAPHLET*ICIFLL 359
           +  +FHISPD    +  A  H    +C  LL
Sbjct: 596 YEQKFHISPDEPEKIREAVKHYVHGLCWVLL 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,843
Number of Sequences: 5004
Number of extensions: 47712
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)