Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313A01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0267 + 42410174-42410252,42410679-42411097 56 2e-08
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 54 9e-08
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 54 9e-08
05_01_0043 - 295041-295173,296252-296537,296616-296697 54 9e-08
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 54 9e-08
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 33 0.18
09_06_0223 + 21659549-21659729,21659888-21659979 29 3.0
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 3.0
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 29 3.0
05_03_0591 + 15892772-15893412,15893478-15893910 28 4.0
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 28 5.2
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 27 6.9
06_03_1175 + 28168007-28170058 27 6.9
08_02_0035 + 11453171-11455186 27 9.1
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505... 27 9.1
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 7 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
AQQP+LFVGMILILIFAE LGLYGLIV I L
Sbjct: 125 AQQPKLFVGMILILIFAEALGLYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 13 QPRLFVGMILILIFAEVLGLYGLIVAIYL 99
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 7 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 125 AQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 13 QPRLFVGMILILIFAEVLGLYGLIVAIYL 99
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 7 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 125 AQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 13 QPRLFVGMILILIFAEVLGLYGLIVAIYL 99
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 7 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 126 AQQPKLFVGMILILIFAEALALYGLIVGIIL 156
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 13 QPRLFVGMILILIFAEVLGLYGLIVAIYL 99
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 49 RPELVMKSIVPVVMAGVLGIYGLIIAVII 77
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +1
Query: 7 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
AQQP+LFVGMILILIFAE L LYGLIV I L
Sbjct: 159 AQQPKLFVGMILILIFAEALALYGLIVGIIL 189
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 13 QPRLFVGMILILIFAEVLGLYGLIVAIYL 99
+P L + I+ ++ A VLG+YGLI+A+ +
Sbjct: 50 RPELVMKSIVPVVMAGVLGIYGLIIAVII 78
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 7 AQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
AQ LFV +++I IF LGL+G+IV I +
Sbjct: 136 AQNSSLFVKILVIEIFGSALGLFGVIVGIIM 166
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 16 PRLFVGMILILIFAEVLGLYGLIVAIYL 99
PR+ ++ +IF E + +YG+IVAI L
Sbjct: 55 PRITSKNLISVIFCEAVAIYGVIVAIIL 82
>09_06_0223 + 21659549-21659729,21659888-21659979
Length = 90
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 208 YRRRPSLCASSDSDNEHRGSEHGRRE 131
++RR S DNE +G +HGRRE
Sbjct: 35 WQRRKRDTNGSGKDNEGKGGQHGRRE 60
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -3
Query: 189 CARLQTQIMSIEA--RSTGDGSGVCSGR 112
C+R++TQ+ ++A R+TG G G +GR
Sbjct: 529 CSRMKTQMSKMKAARRATGGGGGAAAGR 556
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 136 VARAPSLYAHYLSLKTRTGM---VVAGSGSTLH-RVSEHPSTLVYYICSLLVFTYLQTGA 303
+ R+P + H LSL + GM +VA GS H + E+PS ++ + S+ + L+
Sbjct: 21 IGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSVQLTGILKISG 80
Query: 304 A 306
A
Sbjct: 81 A 81
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 127 CVFRAFILCTGRWRR*VRKDPILQRK 50
C RA ++C RWRR + DP QR+
Sbjct: 28 CAVRASLVCK-RWRRLLTDDPCFQRR 52
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = -2
Query: 367 KVFSKNIQIHVSRCGAAAATRLHRSGDM*KRAGNKCNIQEWKGAPKPYARWTR--YRRRP 194
KVFS N Q H + + + + H+S M G + G+PKPY+ + R P
Sbjct: 593 KVFSNNNQPHGAAFQHSHSYQDHKSEHMSSSPGTLTGPEFLWGSPKPYSEHAQSPIWRPP 652
Query: 193 SL--CASSDSDNEHRGSEHGRREWCVF 119
++ S++ ++ +G +G R+ +F
Sbjct: 653 AIGHAIPSNTRSQGQGLLYGGRQASLF 679
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -3
Query: 372 YKKFLVKIYRFTSLDAEQPQQQGCTGLEICENEQGTNVIYKSGRVLRNPMQGGPATGDDH 193
Y FL++I++ ++D G E + E+G + +G R G +GD+H
Sbjct: 216 YLDFLIEIFQGVAVDGSTAY---IPGFEDEDEEEGEDEAGDAGEAARGERADGEGSGDEH 272
>06_03_1175 + 28168007-28170058
Length = 683
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 200 SPVAGPPCIGFRSTLPLLYITFVPCSFSHISRPVQPCCCGCSASRD 337
SPV P G S+ P + V C+ + R CC SA D
Sbjct: 396 SPVVFPDQTGLMSSTPAVASWQVACNITRPKRRAAKCCVSFSAYYD 441
>08_02_0035 + 11453171-11455186
Length = 671
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 257 YTRVEGCSETLCKVDPLPATTIPVRVFRL 171
++ ++ + LC+ DPLP T + +FR+
Sbjct: 100 FSMLKNATAFLCRTDPLPPATADLLMFRI 128
>03_02_0021 -
5049705-5049713,5049744-5049770,5049877-5049940,
5050019-5050806,5050888-5051046,5051778-5052419
Length = 562
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 222 QGGPATGDDHPCARLQTQIMSIEARSTGDGSGVCSGRLFCVQ 97
QG P+ G + ++S R+TGDG G GR F V+
Sbjct: 495 QGAPSAGSSYHSMPYGLDLLSRGKRNTGDG-GDKEGRCFLVK 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,488
Number of Sequences: 37544
Number of extensions: 351706
Number of successful extensions: 955
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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