Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   7e-11
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)                      29   2.3  
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)                   27   7.1  
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)                    27   7.1  
SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24)                    27   9.4  
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    27   9.4  
SB_39904| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_35101| Best HMM Match : AT_hook (HMM E-Value=4.7)                   27   9.4  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +1

Query: 1   GTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 99
           GTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 119 GTAQQPRLFVGMILILIFAEVLGLYGLIVALIL 151


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 136  REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRI 23
            R WCV+   R+ I CT RW R V   P  + +   +S RR+
Sbjct: 931  RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRL 971


>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
          Length = 927

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 242 LPLLYITFVPCSFSHISRPVQPCCCGCSASRD 337
           +P+L++  +PC   ++S     CCC C   RD
Sbjct: 411 VPILFLISLPCLLVNMS-----CCCSCKPKRD 437


>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 168 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 37
           + ++  +STGD S VC G +F    D   K +  Q   E K  N
Sbjct: 15  LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 284 HISRPVQPCCCGC 322
           H+  PV PCCC C
Sbjct: 77  HVELPVSPCCCLC 89


>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
          Length = 261

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 372 YKKFLVKIYRFTSLDAEQPQQQGCTGLEICENEQGTNVIYKSGRVL 235
           YK+  +++ R      + PQQ+G   +E      GT  +  SGR L
Sbjct: 170 YKENALRVSRLMEDKPQTPQQEGAFWIEYVIRNNGTQHLRPSGRDL 215


>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
          Length = 486

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 215 PPCIGFRSTLPLLYITFVPCSFSHISRPVQPCCCGC 322
           P C G   T  L Y  F PC+ + I RP+  C   C
Sbjct: 165 PKC-GKHLTKALCYHLFPPCTKNAIQRPIYICKAQC 199


>SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24)
          Length = 456

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 241 GAPKPYARWTRY 206
           G PKP+ +WTRY
Sbjct: 47  GLPKPFVKWTRY 58


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 83  SSPSTCTQNKRPEHTPLPSPVLRA 154
           S+PST T+  RP   P PSP   A
Sbjct: 250 STPSTPTEPPRPAEPPRPSPAATA 273


>SB_39904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 226 YARWTRYRRRPSLCASSDSDNEHRGSEHGRREWCV 122
           + + +R+R +   CAS     E  G +  +R WCV
Sbjct: 84  FKKMSRFRNQMGGCASQVVPEEVAGQQPRKRVWCV 118


>SB_35101| Best HMM Match : AT_hook (HMM E-Value=4.7)
          Length = 221

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 235 PKPYARWTRYRRRPSLCASSDSDNEHRGSEHGRR 134
           P    R  R+ RRP + +  D  + +R  +HGRR
Sbjct: 134 PPQRTRDVRHSRRPRVDSDEDLSSRNREVKHGRR 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,912
Number of Sequences: 59808
Number of extensions: 381450
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)