Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313A01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    71   7e-15
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.62 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   7.7  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 70.9 bits (166), Expect = 7e-15
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 1   GTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 102
           GTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY
Sbjct: 121 GTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 154


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 215 PPCIGFRS--TLPLLYITFV---PCSFSHISRPVQPCCCGCSASRDVNLYIFT 358
           PP +G++   + P   +TF    P + + I  PV+PC   C  + D    +++
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYS 251


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 22  LFVGMI-LILIFAEVLGLYGLIVAIY 96
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 105 CVQVDGDDKSVKTQYFSENKNKNHSD 28
           C+  D   +S+ TQ+    +++ HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 438 LIYYTYVLFSVTGENISFAISIDISV 515
           L   T+ L S +GE ++ +ISI IS+
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISL 286


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 438 LIYYTYVLFSVTGENISFAISIDISV 515
           L   T+ L S +GE ++ +ISI IS+
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISL 286


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 511 DMSIEIAKEMFSPVTENKTYV 449
           ++S  ++ E+  PVT + TY+
Sbjct: 46  NVSCSVSWEVHDPVTNSDTYI 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,350
Number of Sequences: 438
Number of extensions: 2949
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)