Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   205   4e-54
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   204   6e-54
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   0.97 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   1.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   1.7  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.0  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    26   3.0  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   3.9  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   5.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.0  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   9.0  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  205 bits (500), Expect = 4e-54
 Identities = 104/173 (60%), Positives = 124/173 (71%)
 Frame = +3

Query: 3   RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 182
           R ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE
Sbjct: 11  RSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSE 70

Query: 183 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 362
             ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T
Sbjct: 71  GVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129

Query: 363 EAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 521
                     +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ G
Sbjct: 130 STP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSG 177


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  204 bits (498), Expect = 6e-54
 Identities = 104/173 (60%), Positives = 124/173 (71%)
 Frame = +3

Query: 3   RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 182
           R ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE
Sbjct: 11  RSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSE 70

Query: 183 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 362
             ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T
Sbjct: 71  GVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129

Query: 363 EAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 521
                     +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ G
Sbjct: 130 ATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSG 177


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +3

Query: 66  PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 245
           P  NT + PQ     RSR   T  R+L   +G  S  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 246 RTKTLVKNAIVVVDATPFRQWYE 314
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +3

Query: 288 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 467
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 468 FHTGRLLACVASR 506
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 54   ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 206
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 171 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 344
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 345 K 347
           +
Sbjct: 310 Q 310


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 21  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 149
           K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 42  KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 310 YHCLNGVASTTTIAFLTRVFVRTNS 236
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 232 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 146
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 79  PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 174
           P  VLS   P++  +  L +  C+W P   LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 254 DPCQECNCCSRCNSIQAVV 310
           D C++   CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 381 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 488
           ++ K  +K A + L RQ+  K   A EE+    RLL
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,667
Number of Sequences: 5004
Number of extensions: 39278
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)