Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              245   2e-65
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           56   2e-08
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.3  
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   3.1  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           28   5.4  
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)                   27   9.4  
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  245 bits (599), Expect = 2e-65
 Identities = 115/164 (70%), Positives = 132/164 (80%)
 Frame = +3

Query: 30  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 209
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 210 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 389
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NK
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 390 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 521
           KRS    RK  AR+  AKV   +EEQF TGRL ACV+SRPGQ G
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSG 167


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 24/77 (31%), Positives = 47/77 (61%)
 Frame = +3

Query: 90  PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 269
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 270 AIVVVDATPFRQWYESH 320
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   RATGGKRAPIRKKRKYELGRPAANTRLGP 92
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 345 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 482
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 189 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 302
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -2

Query: 319 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 179
           CD+ HC   +  T+T+  + +V    + +   ++   ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 387 KKRSQKTARKYLARQRLAKVEGALEE 464
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 464 AIPHGAFAGLRGESPRSVW 520
           A PH A +G+R  SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 464 AIPHGAFAGLRGESPRSVW 520
           A PH A +G+R   PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 464 AIPHGAFAGLRGESPRSVW 520
           A PH A +G+R   PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 464 AIPHGAFAGLRGESPRSVW 520
           A PH A +G+R   PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250


>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 188 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 298
           +S   YH C   C+    I  Y DP  EC  CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229


>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
          Length = 717

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 443 LSKTLPCQVFSCCLLTSLLVD 381
           + K+LP  + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 3   RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 140
           RR  GG R+P  + R+    R     R  P      RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,680
Number of Sequences: 59808
Number of extensions: 337534
Number of successful extensions: 963
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)