BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312H07f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 245 2e-65 SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 2e-08 SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 1.3 SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 3.1 SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 28 5.4 SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 27 9.4 SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) Length = 192 Score = 245 bits (599), Expect = 2e-65 Identities = 115/164 (70%), Positives = 132/164 (80%) Frame = +3 Query: 30 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 209 P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RII Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63 Query: 210 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 389 DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NK Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123 Query: 390 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 521 KRS RK AR+ AKV +EEQF TGRL ACV+SRPGQ G Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSG 167 >SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) Length = 147 Score = 55.6 bits (128), Expect = 2e-08 Identities = 24/77 (31%), Positives = 47/77 (61%) Frame = +3 Query: 90 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 269 P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96 Query: 270 AIVVVDATPFRQWYESH 320 +IV VD PF W++ + Sbjct: 97 SIVQVDNKPFEDWFQEY 113 >SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2537 Score = 30.3 bits (65), Expect = 1.0 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 6 RATGGKRAPIRKKRKYELGRPAANTRLGP 92 R GG R P+++ +E +P+ N R GP Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797 >SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) Length = 883 Score = 29.9 bits (64), Expect = 1.3 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +3 Query: 345 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 482 + AKL + EE II K+ + TA + ++ K++ ALE +G+ Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746 >SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 230 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +3 Query: 189 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 302 T++ +I D++ N N VR +TL+ NA +++D F+ Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53 >SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) Length = 530 Score = 28.7 bits (61), Expect = 3.1 Identities = 11/47 (23%), Positives = 24/47 (51%) Frame = -2 Query: 319 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 179 CD+ HC + T+T+ + +V + + ++ ++ V R +HS Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494 >SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 210 Score = 28.3 bits (60), Expect = 4.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 387 KKRSQKTARKYLARQRLAKVEGALEE 464 K+R QK + Y RQR ++ +LEE Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40 >SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) Length = 842 Score = 27.9 bits (59), Expect = 5.4 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 464 AIPHGAFAGLRGESPRSVW 520 A PH A +G+R SPR +W Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 464 AIPHGAFAGLRGESPRSVW 520 A PH A +G+R PRS+W Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 464 AIPHGAFAGLRGESPRSVW 520 A PH A +G+R PRS+W Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 464 AIPHGAFAGLRGESPRSVW 520 A PH A +G+R PRS+W Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250 >SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 720 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +2 Query: 188 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 298 +S YH C C+ I Y DP EC CS+C+ + Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229 >SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) Length = 717 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -1 Query: 443 LSKTLPCQVFSCCLLTSLLVD 381 + K+LP + SC LLTSL++D Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543 >SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = +3 Query: 3 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 140 RR GG R+P + R+ R R P RSR G+ + R Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,877,680 Number of Sequences: 59808 Number of extensions: 337534 Number of successful extensions: 963 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 961 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -