Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312H05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 74 1e-14
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 74 1e-14
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 56 2e-09
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 46 5e-06
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 38 0.001
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 37 0.002
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 37 0.002
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 31 0.10
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.7
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 27 1.7
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 26 3.0
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 26 3.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 5.2
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 6.8
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 9.0
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.0
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 25 9.0
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 9.0
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.0
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 74.1 bits (174), Expect = 1e-14
Identities = 29/74 (39%), Positives = 50/74 (67%)
Frame = +1
Query: 256 RPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHK 435
RP NAF+++ + L PS++N+++SK +G MW+N S+E ++ + K ++ + QH+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164
Query: 436 KQHPDYKYQPRRRK 477
K +P YKYQPR+ K
Sbjct: 165 KMYPGYKYQPRKNK 178
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 74.1 bits (174), Expect = 1e-14
Identities = 29/74 (39%), Positives = 50/74 (67%)
Frame = +1
Query: 256 RPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHK 435
RP NAF+++ + L PS++N+++SK +G MW+N S+E ++ + K ++ + QH+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164
Query: 436 KQHPDYKYQPRRRK 477
K +P YKYQPR+ K
Sbjct: 165 KMYPGYKYQPRKNK 178
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 56.4 bits (130), Expect = 2e-09
Identities = 26/79 (32%), Positives = 49/79 (62%)
Frame = +1
Query: 238 RRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADK 417
++ VKRP+N+FM++ RR AE P+ ++ +S+ +G +W+N S + K + +
Sbjct: 12 QKSSVKRPLNSFMLY----RRDRQAEIPTSNHQSISRIIGQLWRNESAQVKKYYSDLSAL 67
Query: 418 LRTQHKKQHPDYKYQPRRR 474
R +H ++P+YKY P++R
Sbjct: 68 ERQKHMLENPEYKYTPKKR 86
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 45.6 bits (103), Expect = 5e-06
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KR M+AFM F+ R ++ + P +L LG WK L+ E+ P+ ++A + + ++
Sbjct: 17 KRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERY 76
Query: 433 KKQHPDY 453
+++ +Y
Sbjct: 77 ERERKEY 83
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHN--AELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
KRP +A+ +F + R + N E++K++ W +LSE+++ + +EA KLR
Sbjct: 118 KRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLRE 177
Query: 427 QHKKQHPDY 453
++++ Y
Sbjct: 178 AYEEEMAAY 186
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 271 FMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPF 399
F F+ + +L AE +L L K+L W NL+EEEK P+
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPY 244
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Frame = +1
Query: 235 MRRPHV-KRPMNAFMVFAQAMRR--RLSAER--PSLHNA--ELSKSLGSMWKNLSEEEKL 393
+R P V K+P +AF++F + +R +L E P + E +++ WK L+E++K
Sbjct: 141 LRHPDVPKKPSSAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKK 200
Query: 394 PFIKEADKLRTQHKK 438
PFI ++ L+ Q+ K
Sbjct: 201 PFIDKSKALKEQYDK 215
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 186 YFHEFSDGLVYLQLVPGPVALLAPTHGHFQR*NGILFEKKMNIFIIELPAPKFRWNVNSA 7
Y H F +YL P +A+LA F + I E M +F++E+ A + +W+ A
Sbjct: 155 YIHIFQVLHLYLLASPTYIAMLAGNERAFGAWDWIALELFMFMFVLEMLADQQQWDYYEA 214
Query: 6 R 4
R
Sbjct: 215 R 215
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +1
Query: 331 NAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQ-----PRRRKPPLASA 495
N+ + SL +WK + F++ +++L + KKQ P + Q P K P ASA
Sbjct: 340 NSCIPSSLKILWKEVDYHCISSFLQSSNELASSLKKQLPSFLAQTPLTLPSNTKTPPASA 399
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 312 GRQTAAHRLREHHECI 265
GR AAHRL E H+C+
Sbjct: 171 GRFCAAHRLMEDHDCV 186
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 358 SMWKNLSEEEKLPFIKEADKLRTQHKKQ 441
S WKNL P EAD+L + +KQ
Sbjct: 2 SFWKNLFTSAFTPISAEADELIKEDRKQ 29
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 196 DTILPQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAE 339
+ I+P T G G + K +F+ F ++ + R E +HN+E
Sbjct: 19 EIIVPSTTNGNGTIESYKEKSVGTSFLDFFRSYKLRPDNEFAEVHNSE 66
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 265 NAFMVFAQAMRRRLSAERPSLHNAELSKSLGSM-WKNLSEEEKLPFIKEADKLRTQHKKQ 441
N++ F A+ RRL + PS+ ++ + LG K K+ K+ D +
Sbjct: 522 NSYSCFKSALLRRLIQQLPSI-SSIIDHFLGMFDQKEAENNNKVDMFKDIDNFDLSEEPN 580
Query: 442 HPDYK 456
DY+
Sbjct: 581 DVDYE 585
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 255 ETDECIHGVRASDAP--PFVGRTTLPAQRRTQQIIR 356
E +HGVR SD+P PF+ + + Q+ IR
Sbjct: 3 ENSTAVHGVRLSDSPEDPFLRKRLASNTQLNQKKIR 38
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 321 LPAQRRTQQIIRIHVEKFKRRGE 389
LP + +I++IH+EK ++GE
Sbjct: 302 LPNEVGRMEILKIHLEKVSKQGE 324
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 207 QYCIVVKYFHEFSDGLVYLQLVPGPVALLAPTHGH 103
+ C+ +KYFH+ +G++Y L + LL+P GH
Sbjct: 791 EVCLALKYFHD--NGIIYRDLKLDNI-LLSP-DGH 821
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 337 ELSKSLGSMWKNLSEEEKLPFIKEAD 414
EL+ L S+ + LS+EE I+EAD
Sbjct: 106 ELTHVLTSLGERLSQEEVADMIREAD 131
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 352 LGSMWKNLSEEEKLPFIKEADKL 420
+GS + LSEEEK F AD L
Sbjct: 148 VGSFLRELSEEEKNAFSPSADDL 170
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 207 QYCIVVKYFHEFSDGLVYLQLVPGPVALLAPTHGHFQ 97
+ C+ +KYFHE +G+ Y L + LL P GH +
Sbjct: 772 EVCLALKYFHE--NGIAYRDLKLDNI-LLCP-DGHIR 804
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,553
Number of Sequences: 5004
Number of extensions: 46410
Number of successful extensions: 165
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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