Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312H05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 134 3e-32
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 2e-26
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 116 2e-26
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 8e-26
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 4e-25
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 2e-24
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 106 1e-23
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 1e-23
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 104 4e-23
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 100 6e-22
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 6e-22
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 99 1e-21
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 99 1e-21
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 90 9e-19
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 72 3e-13
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 48 5e-06
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 47 8e-06
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 46 1e-05
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 46 3e-05
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 44 6e-05
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 44 1e-04
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041) 40 0.001
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19) 36 0.020
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 36 0.027
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_25919| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 33 0.19
SB_30587| Best HMM Match : IncA (HMM E-Value=0.42) 31 0.76
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 30 1.0
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53479| Best HMM Match : Zot (HMM E-Value=1.1) 29 2.3
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_27114| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_12475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 29 3.1
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 29 3.1
SB_30665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.5e-19) 28 4.1
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 4.1
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 28 5.4
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37) 27 7.1
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64) 27 9.4
SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09) 27 9.4
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 134 bits (325), Expect = 3e-32
Identities = 61/109 (55%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Frame = +1
Query: 154 INEAVGKLVKIFDYDTILPQPTKGGGCM-RRPHVKRPMNAFMVFAQAMRRRLSAERPSLH 330
I AV ++ +D+ +++P P + G ++PHVKRPMNAFMV+AQA RR+L+ + P LH
Sbjct: 32 IASAVNHVLDGYDW-SLIPLPVRVNGIKTQKPHVKRPMNAFMVWAQAARRKLADQYPHLH 90
Query: 331 NAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRK 477
NAELSK+LG +WK L++ EK PFI+EA++LR +HK++HPDYKYQPRR+K
Sbjct: 91 NAELSKTLGKLWKLLNDSEKKPFIEEAERLRIKHKREHPDYKYQPRRKK 139
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 116 bits (278), Expect = 2e-26
Identities = 47/80 (58%), Positives = 65/80 (81%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRPMNAFMV+++ RR+++ E P +HN+E+SK LGS WK L++++K PF++EA KLR
Sbjct: 326 HVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLRA 385
Query: 427 QHKKQHPDYKYQPRRRKPPL 486
QH K+HPDYKY+PRR+ L
Sbjct: 386 QHMKEHPDYKYRPRRKPKSL 405
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 116 bits (278), Expect = 2e-26
Identities = 47/80 (58%), Positives = 65/80 (81%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRPMNAFMV+++ RR+++ E P +HN+E+SK LGS WK L++++K PF++EA KLR
Sbjct: 9 HVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLRA 68
Query: 427 QHKKQHPDYKYQPRRRKPPL 486
QH K+HPDYKY+PRR+ L
Sbjct: 69 QHMKEHPDYKYRPRRKPKSL 88
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 113 bits (272), Expect = 8e-26
Identities = 46/79 (58%), Positives = 64/79 (81%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRPMNAFMV++Q RR+++ E P +HNAE+SK LG WK LSE EK PF++E+++LR
Sbjct: 44 HVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVEESERLRI 103
Query: 427 QHKKQHPDYKYQPRRRKPP 483
+H + +PDYKY+PR++K P
Sbjct: 104 RHMQAYPDYKYRPRKKKQP 122
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 111 bits (266), Expect = 4e-25
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
P VKRPMN+FMV+AQ+ RR+L+ + P +HNAELSK LG +W+ LS EK P++ EA +L
Sbjct: 109 PKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRMLSAAEKQPYVDEAARLD 168
Query: 424 TQHKKQHPDYKYQPRRRKPPL--ASASTPRV 510
+HK+ HPDYKY+PRRR+ L A PRV
Sbjct: 169 KRHKEDHPDYKYRPRRRQKSLKRAYGQPPRV 199
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 108 bits (260), Expect = 2e-24
Identities = 46/79 (58%), Positives = 62/79 (78%)
Frame = +1
Query: 250 VKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
VKRPMNAFMV+++ RR+++ + P +HN+E+SK LGS WK LSE+EK P+I EA +LR
Sbjct: 789 VKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRPYIDEARRLRAV 848
Query: 430 HKKQHPDYKYQPRRRKPPL 486
H K+HPDYKY+PRR+ L
Sbjct: 849 HMKEHPDYKYRPRRKSKTL 867
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 106 bits (255), Expect = 1e-23
Identities = 41/76 (53%), Positives = 61/76 (80%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRPMN+FM++A+ MRR+ + E P LHNAE+SK LG W L+ ++K PF+++A++LR
Sbjct: 93 HVKRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRI 152
Query: 427 QHKKQHPDYKYQPRRR 474
+H K+HP+Y+Y P+RR
Sbjct: 153 RHMKEHPNYRYTPKRR 168
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 106 bits (254), Expect = 1e-23
Identities = 46/76 (60%), Positives = 59/76 (77%)
Frame = +1
Query: 250 VKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
+KRPMNAFMV+AQ RRRL+ P LHNAELSK LG W+ L+ +K PF+ EA++LR Q
Sbjct: 366 IKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRALNSTQKRPFVDEAERLRLQ 425
Query: 430 HKKQHPDYKYQPRRRK 477
H + +P+YKY+PRRRK
Sbjct: 426 HMQDYPNYKYRPRRRK 441
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 104 bits (250), Expect = 4e-23
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV+++ RR+L+ + P++ N E+SK LG+ W LSEEEK PF+ EA +LRT
Sbjct: 8 HIKRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRPFVTEAKRLRT 67
Query: 427 QHKKQHPDYKYQPRRRK 477
H +++PDY Y+PRRRK
Sbjct: 68 IHNQKYPDYSYKPRRRK 84
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 102 bits (245), Expect = 2e-22
Identities = 43/86 (50%), Positives = 62/86 (72%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNA+MV+++ RRR++ E P + N+E+SK LG W +L+ +EK P+++EA +LR
Sbjct: 7 HIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAKRLRE 66
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTP 504
HKK HPDYKYQP+R+ TP
Sbjct: 67 LHKKDHPDYKYQPKRKPKTSPKLKTP 92
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 101 bits (243), Expect = 3e-22
Identities = 44/80 (55%), Positives = 59/80 (73%)
Frame = +1
Query: 238 RRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADK 417
++ HVKRPMN FMV+++ R ++ E P ++NA LSK LG WK LS EEK P+I++A
Sbjct: 4 KKTHVKRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEKAKH 63
Query: 418 LRTQHKKQHPDYKYQPRRRK 477
L HK++HPDYKYQP+RRK
Sbjct: 64 LTEMHKEKHPDYKYQPKRRK 83
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 100 bits (240), Expect = 6e-22
Identities = 41/76 (53%), Positives = 58/76 (76%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRP+N+FMV+A+ RR ++ E P + NAE+SK LG W+ + E EKLP+ +EA +LR
Sbjct: 9 HVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLPYTEEALRLRR 68
Query: 427 QHKKQHPDYKYQPRRR 474
QHK HP+Y+Y+PRR+
Sbjct: 69 QHKVDHPNYRYKPRRK 84
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 100 bits (240), Expect = 6e-22
Identities = 43/78 (55%), Positives = 60/78 (76%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRPMNAFMV+++ RR S E P +HN+E+SK LG WK + +E K P+I++A +L+
Sbjct: 8 HVKRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDELKQPYIEKAKELQA 67
Query: 427 QHKKQHPDYKYQPRRRKP 480
QH +++P YKY+PRRRKP
Sbjct: 68 QHSRENPGYKYKPRRRKP 85
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 99 bits (238), Expect = 1e-21
Identities = 42/76 (55%), Positives = 56/76 (73%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFM+++ RR+L+AE P LHN+++SK LG+ W+ L+ EEK F EA L
Sbjct: 6 HIKRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNE 65
Query: 427 QHKKQHPDYKYQPRRR 474
H +HPDYKY+PRRR
Sbjct: 66 LHMIEHPDYKYRPRRR 81
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 99 bits (238), Expect = 1e-21
Identities = 42/76 (55%), Positives = 56/76 (73%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFM+++ RR+L+AE P LHN+++SK LG+ W+ L+ EEK F EA L
Sbjct: 6 HIKRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNE 65
Query: 427 QHKKQHPDYKYQPRRR 474
H +HPDYKY+PRRR
Sbjct: 66 LHMIEHPDYKYRPRRR 81
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 90.2 bits (214), Expect = 9e-19
Identities = 35/75 (46%), Positives = 58/75 (77%)
Frame = +1
Query: 250 VKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
+KRP+NAF+++++ RR ++ E P +HN ++S+ LG W+ L+EEEK + +EA KL+ +
Sbjct: 19 IKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKLKEE 78
Query: 430 HKKQHPDYKYQPRRR 474
HK+++P YKYQPR+R
Sbjct: 79 HKERYPHYKYQPRKR 93
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = +1
Query: 250 VKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
VKRPMNAFM++A+ R ++ P +NAE+S LG +W +LS E++ P+ EA +L+ +
Sbjct: 101 VKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQKPYFDEATRLKDK 160
Query: 430 HKKQHPDYKYQPRRRKPPLASASTP 504
HK +HP++ YQPR K TP
Sbjct: 161 HKAEHPNWVYQPRPAKRRALQLGTP 185
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKL-R 423
HVK PMNAFMV ++ R+ ++ P +HN+E SKSLG WK L+ EEK PFI E +L R
Sbjct: 8 HVKSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKMLTSEEKDPFIAEPKRLQR 67
Query: 424 TQHKK 438
T H +
Sbjct: 68 TSHAR 72
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 68.9 bits (161), Expect = 2e-12
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +1
Query: 223 GGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFI 402
GG + H++RPMNAFM+F++ R + + P N +SK LG W L EEK +
Sbjct: 507 GGNDDSKDHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYALGPEEKQSYN 566
Query: 403 KEADKLRTQHKKQHPDYKYQPR-RRKPPLASASTPRV 510
A +++ H K HPD+K+ + R+K P S + +
Sbjct: 567 ALAAQVKEAHFKAHPDWKWCTKDRKKSPRKSTDSAEI 603
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +1
Query: 220 KGGGCMRRPHV-KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLP 396
KGG + P+ KR M+A+M++ R+ + + P + E+SK G MWKNL+++ K
Sbjct: 531 KGGKKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWE 590
Query: 397 FIKEADKLR-TQHKKQHPDYKYQPRRRKPPLASASTPRVKR 516
+K + Q K++ + K + P + + + +
Sbjct: 591 EKAAIEKQKYVQRMKEYNENKKNDKEESSPKKKSPSKKASK 631
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 47.2 bits (107), Expect = 8e-06
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K +A+ F Q R +L E A+ SK WKN+SEEEK F+++A K + +
Sbjct: 13 KGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAGKDKERF 72
Query: 433 KKQHPDYKYQP 465
K++ Y P
Sbjct: 73 KEEMQSYTPPP 83
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KR ++A+ F R + + P+ LSK LG MW +++++K + A K + ++
Sbjct: 103 KRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRY 162
Query: 433 KKQHPDYK 456
+ + +K
Sbjct: 163 ESEMKAFK 170
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/68 (29%), Positives = 40/68 (58%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K P+ ++ F R ++ +E P L E+++ LG+MW L +K F++EA+K + ++
Sbjct: 178 KAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEKDKERY 237
Query: 433 KKQHPDYK 456
K+ +Y+
Sbjct: 238 MKELEEYQ 245
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/81 (25%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
K P+ ++ + Q R +L+ + P+L + EL+ L W+ +SEE K + ++ ++ + ++
Sbjct: 153 KMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEERKKAYTEQYEEEKKEY 212
Query: 433 KKQHPDY-KYQPRRRKPPLAS 492
+ Q D+ K + +PPL++
Sbjct: 213 ETQLLDFLKNKYPNVEPPLSA 233
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFI-KEADKL 420
P+V+ P++AF ++A R+ L P + +L K L WK + E+ K +I KE ++
Sbjct: 225 PNVEPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKKEKTEM 284
Query: 421 RTQHKK 438
R KK
Sbjct: 285 RKYQKK 290
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/83 (22%), Positives = 44/83 (53%)
Frame = +1
Query: 256 RPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHK 435
+P++A+ +F + + + + PS E++K +G MW+NL EE+K + + + + +++
Sbjct: 927 KPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYHCKHETAKAEYQ 986
Query: 436 KQHPDYKYQPRRRKPPLASASTP 504
K + + + K L +P
Sbjct: 987 KAMDELISKQKEPKAKLPKLESP 1009
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 44.4 bits (100), Expect = 6e-05
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAER-----PSLHNAELSKSLGSMWKNLSEEEKLPFI-- 402
P VKR +A++ F R +L A+ P E++K G WK L++E+K P++
Sbjct: 494 PVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPYVAK 553
Query: 403 KEADKLRTQHKKQHPDYKYQP-RRRKPPLA 489
EADK R + D K P + ++PP A
Sbjct: 554 AEADKQRYLKESGKNDPKKDPDKPKRPPTA 583
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSL-GSMWKNLSEEEKLPF-IKEADKLRT 426
KRP A+ +F A R+ ++ + +L + + SL G W+ +S+E+K P+ I+EA++ R
Sbjct: 578 KRPPTAYFLFLAAFRKEMAGK--ALEDGKKIPSLAGERWREMSDEDKKPYTIQEAEE-RN 634
Query: 427 QHKKQHPDYK 456
+++K +++
Sbjct: 635 KYEKVMEEWR 644
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPS----LHNAELSKSLGSMWKNLSEEEKLPFIK--EAD 414
K+P NAF +F Q R + + + + EL+KSL W NL +EK + + E D
Sbjct: 56 KKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLLPDEKKVYYEMYERD 115
Query: 415 KLRTQ-HKKQHPDYKYQPRRRKPPLASASTPRVK 513
K R + KQ+ K +++K P + P+ K
Sbjct: 116 KERYELEMKQYSSDKPPSKKQKDPSSKKRKPKGK 149
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/77 (33%), Positives = 34/77 (44%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KRP AF F Q ++ E P L +AE+ K L W NL P +KE + Q
Sbjct: 307 KRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLE-----PSVKECYRKEYQQ 361
Query: 433 KKQHPDYKYQPRRRKPP 483
+ Y+ RKPP
Sbjct: 362 DMEEFRAPYKKLPRKPP 378
>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
Length = 169
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 328 HNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPD 450
H A +S LG WK++ +EE+ ++ EA +L +HKK +PD
Sbjct: 109 HRA-ISVILGDKWKSMKQEERKQYVMEAKQLAEEHKKVNPD 148
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAE 339
KRPMNAFM+FA+ R ++ P N++
Sbjct: 32 KRPMNAFMLFAKRYRLEITQAHPGKDNSQ 60
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 271 FMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPD 450
++ F + R + + P L E++K LG W +L EEK F+ EA++ + ++ ++
Sbjct: 204 YVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQKFLDEAEEDKKRYVEELRA 263
Query: 451 YK 456
Y+
Sbjct: 264 YQ 265
>SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)
Length = 159
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 331 NAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKY 459
N ++S LG W +SE K PF + A +L + K +P++KY
Sbjct: 4 NRKISIMLGDYWNCMSEGHKRPFQEMARELMRKTKATYPEFKY 46
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
KR + +++F+ MR + E P E+S+ +G W+N S K + +A +Q
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQMQLSQ 94
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQ 429
KR + +++F+ MR + E P E+S+ +G W+N S K + +A +Q
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQMQLSQ 1327
>SB_25919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 403 KEADKLRTQHKKQHPDYKYQPRRRKPPLASASTPRVKRE 519
+EA +LRT+++++H Y QP+ + P LA + R+K E
Sbjct: 21 QEAAELRTKNEEEHMKYGSQPKWKIPLLARQESDRLKEE 59
>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 1311
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMR 297
HVKRPMN+FM++A+ MR
Sbjct: 1294 HVKRPMNSFMIWAKVMR 1310
>SB_30587| Best HMM Match : IncA (HMM E-Value=0.42)
Length = 272
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 325 LHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRR 471
LH A++S+ + K SE+EKLP + K K+ P YK Q ++
Sbjct: 155 LHIADVSRKIPEEIKEFSEKEKLPSSQNKMKDLQAMLKKAPQYKDQVKK 203
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +3
Query: 141 GQAGDKRGRRKTRENI*LRYNTAATNERWWVYASSTRQETDECIHGVRASDAPPFVGRTT 320
G+ + G+R+ E+ LR N W R ECIH AS P +V +
Sbjct: 535 GKQERRSGKREMVESDELRQILWPCNVEWLNENMVKRSREGECIHFAAASAGPIYVVFSL 594
Query: 321 LPAQRRTQQIIRIHVE 368
P+ + T +RI E
Sbjct: 595 NPSNKDTWYHLRIGQE 610
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 430 HKKQHPDYKYQPRRRKPPLASASTPRVKR 516
HK +HP+ P R +P + +AS P V +
Sbjct: 122 HKNKHPNLSISPPRSEPEMENASKPEVAK 150
>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 159 RGRRKTRENI*LRYNTAATNERWWVYASSTRQETDECIHGVRASDAPPFVGRTTLP 326
R RKT+E + +A+T E + A R+ T E +H PP TLP
Sbjct: 835 RAGRKTKEGAIIPATSASTTESATLVADIVRRVTAEQVHPAAIPGNPPVPPLETLP 890
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 340 LSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPD 450
+++SLG++ K + E+ P+I + DKL+ K+ D
Sbjct: 463 VAESLGTLTKLIGEKAMTPYIDKLDKLKADKVKEFAD 499
>SB_53479| Best HMM Match : Zot (HMM E-Value=1.1)
Length = 251
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLS 309
H+K+P+NAFM++ + MR +++
Sbjct: 227 HIKKPLNAFMLYMKDMRPKVA 247
>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 210 RQYCIVVKYFHEFSDGLVYLQLVPGPVALLAPTH 109
R Y +VKYF + +G Y++ G V LL+P H
Sbjct: 608 RSYRFIVKYFDKTENG--YVEAGKGEVLLLSPRH 639
>SB_27114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KRP N+ A R + P H A + +WK +SEE P K KL+ +
Sbjct: 16 KRPKNSPPEGADPKNRIKTNPEPETHEAIYEE----IWKEISEEHPPPLPKRGPKLKQRS 71
Query: 433 K 435
K
Sbjct: 72 K 72
>SB_12475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +3
Query: 162 GRRKTRENI*LRYNTAATNERWWVYASSTRQETDECIHGVRASDAPPFVGRTTLPAQRRT 341
G+R+ E LR N W R ECIH AS P +V + P+ + T
Sbjct: 246 GKREMVERDELRQILWPCNVEWLNENMVKRSRKGECIHFAAASAGPIYVVFSLNPSNKDT 305
Query: 342 QQIIRIHVE 368
+RI E
Sbjct: 306 WYHLRIGQE 314
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 271 FMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNL--SEEEKLPFIKEADKLRTQHKKQ 441
++ F +AMR +++ P + + ++ LG+MW++ ++ P + + K + KK+
Sbjct: 299 YVKFTKAMRPAVASANPGVAHTRINALLGAMWQDFKTAQGPSSPASRSSSKKSSAKKKK 357
>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
Length = 527
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KRP N+ A R + P H A + +WK +SEE P K KL+ +
Sbjct: 10 KRPENSPPEGADPKNRIKTNPEPETHEAIYEE----IWKEISEEHPPPLPKRGPKLKQRS 65
Query: 433 K 435
K
Sbjct: 66 K 66
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 298 RRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDY-KYQPRRR 474
++ + E SL+ +ELS L ++ K L EEE R Q++++ P++ K R+
Sbjct: 691 KKTAKEMESLNESELSAKLKTISKKLEEEEH----------RKQNEEKKPEFMKVNLRKA 740
Query: 475 KPPLAS 492
KP AS
Sbjct: 741 KPQTAS 746
>SB_30665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.5e-19)
Length = 578
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +3
Query: 162 GRRKTRENI*LRYNTAATNERWWVYASSTRQETDECIHGVRASDAPPFVGRTTLPAQRRT 341
G+R+ E LR N W R ECIH AS P +V + P+ + T
Sbjct: 156 GKREMVERDELRQILWPCNVEWLNENMVKRSREGECIHFAAASAGPIYVVFSWNPSNKDT 215
Query: 342 QQIIRIHVE 368
+RI E
Sbjct: 216 WYHLRIGQE 224
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/109 (21%), Positives = 38/109 (34%)
Frame = +1
Query: 187 FDYDTILPQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMW 366
F+ D LP+ + + + H + P + + R N E +
Sbjct: 726 FEKDVPLPRVHEEQDQVEKEHRRTPDGTQEPYEKHRRPSFDDNEEECENGEDKARKVEVE 785
Query: 367 KNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLASASTPRVK 513
K LS EE+ P R + K++H ++ P PP P K
Sbjct: 786 KRLSREERDPSRSPWASHREERKRRHTPHEDSPPPPPPPPPPPEEPSNK 834
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 HSWCSRKRCAAVCRPNDPPCTTPNSANH*DPCGKI*AKR-RSC 394
H+W RKRCA P + T+ ++ PCG KR R+C
Sbjct: 1408 HAWIERKRCALPDCPVNGNYTSWSAWTECQPCGLGVRKRGRTC 1450
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 278 CSRKRCAAVCRPNDPPCTTPNSAN 349
C K CA+ CR + PC+ +S N
Sbjct: 479 CQHKGCASGCRQHHGPCSEGDSGN 502
>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
Length = 1652
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 183 FHEFSDGLVYLQL-VPGPVALLAPTHGHFQR*NGILFEKKMNIFIIE 46
+H +SD + + +PG LLA T+ F+ I+F + ++F+I+
Sbjct: 1505 YHSYSDNKAMIGVFMPGQRKLLASTNDFFKSTMPIVFYFQSSVFVID 1551
>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
Length = 520
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 340 LSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKK---QHPDYK-YQPRRRKPPLASASTPR 507
L K ++K + E+ L KEAD+L ++HK+ Q+ D K + R+K + R
Sbjct: 223 LEKKENELFKEIKEQAHLS-AKEADRLMSKHKEDLDQYADKKAREMERQKAQIKERLLER 281
Query: 508 VKR 516
KR
Sbjct: 282 RKR 284
>SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)
Length = 317
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 219 RWLRQYCIVVKYFHEFSDGLVYLQLVP 139
R + QYCI++ + + F++ LVY +P
Sbjct: 239 RQIYQYCIILLHVNSFANFLVYSYRIP 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,223
Number of Sequences: 59808
Number of extensions: 366531
Number of successful extensions: 1039
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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