Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312H05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 114 4e-26
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 111 4e-25
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 109 2e-24
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 95 2e-20
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 95 2e-20
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 95 2e-20
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 95 2e-20
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 95 2e-20
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 84 7e-17
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 78 3e-15
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 73 1e-13
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 73 1e-13
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 62 2e-10
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 60 7e-10
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 44 7e-05
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 41 5e-04
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 41 5e-04
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 41 5e-04
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 41 5e-04
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 38 0.003
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 38 0.004
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.094
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 33 0.12
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 33 0.12
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 33 0.12
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 33 0.12
Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical p... 28 3.5
AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein. 28 3.5
AC024751-6|AAK21506.1| 270|Caenorhabditis elegans Hypothetical ... 28 3.5
Z75711-6|CAB00037.3| 387|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amin... 28 4.7
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 27 6.2
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 27 6.2
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF039040-3|AAB94183.1| 370|Caenorhabditis elegans Hypothetical ... 27 6.2
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 114 bits (274), Expect = 4e-26
Identities = 48/88 (54%), Positives = 65/88 (73%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
HVKRPMNAFMV+++ RR+++ + P +HN+E+SK LG+ WK LSE+EK PFI EA +LR
Sbjct: 47 HVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRA 106
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRV 510
H K+HPDYKY+PRR+ PR+
Sbjct: 107 LHMKEHPDYKYRPRRKPKSSNLKQQPRL 134
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 111 bits (266), Expect = 4e-25
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = +1
Query: 208 PQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEE 387
P T G VKRPMNAFMV+++ R++++ E P +HN+E+SK LG+ WK LSE+E
Sbjct: 46 PDSTGKDGKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQE 105
Query: 388 KLPFIKEADKLRTQHKKQHPDYKYQPRRR 474
K PFI EA +LR H K+HPDYKY+PRR+
Sbjct: 106 KRPFIDEAKRLRAIHMKEHPDYKYRPRRK 134
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 109 bits (261), Expect = 2e-24
Identities = 42/76 (55%), Positives = 63/76 (82%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV++Q RR++ +P +HNAE+SK LGS W++L++EEK PF+ EA++LR
Sbjct: 92 HIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRV 151
Query: 427 QHKKQHPDYKYQPRRR 474
H +++PDYKY+PR++
Sbjct: 152 CHMQEYPDYKYKPRKK 167
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV+A+ RR++ P +HN+ +SK LGS WK +S EK P+ +E +L
Sbjct: 177 HIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 236
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRV 510
H +QHPDY+Y+PR ++ + RV
Sbjct: 237 LHMEQHPDYRYRPRPKRTCVIDGKKVRV 264
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV+A+ RR++ P +HN+ +SK LGS WK +S EK P+ +E +L
Sbjct: 174 HIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 233
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRV 510
H +QHPDY+Y+PR ++ + RV
Sbjct: 234 LHMEQHPDYRYRPRPKRTCVIDGKKVRV 261
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV+A+ RR++ P +HN+ +SK LGS WK +S EK P+ +E +L
Sbjct: 280 HIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 339
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRV 510
H +QHPDY+Y+PR ++ + RV
Sbjct: 340 LHMEQHPDYRYRPRPKRTCVIDGKKVRV 367
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV+A+ RR++ P +HN+ +SK LGS WK +S EK P+ +E +L
Sbjct: 328 HIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 387
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRV 510
H +QHPDY+Y+PR ++ + RV
Sbjct: 388 LHMEQHPDYRYRPRPKRTCVIDGKKVRV 415
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +1
Query: 247 HVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRT 426
H+KRPMNAFMV+A+ RR++ P +HN+ +SK LGS WK +S EK P+ +E +L
Sbjct: 328 HIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSK 387
Query: 427 QHKKQHPDYKYQPRRRKPPLASASTPRV 510
H +QHPDY+Y+PR ++ + RV
Sbjct: 388 LHMEQHPDYRYRPRPKRTCVIDGKKVRV 415
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 83.8 bits (198), Expect = 7e-17
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 17/105 (16%)
Frame = +1
Query: 238 RRPHVKRPMNAFMV-----------------FAQAMRRRLSAERPSLHNAELSKSLGSMW 366
R P +KRPMNAFMV ++Q R++++A HN+++SK LG+ W
Sbjct: 81 REPRIKRPMNAFMVINVQTWKIRKSNDYIKVWSQQRRQQIAATGQKFHNSDISKMLGAEW 140
Query: 367 KNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLASAST 501
+ + E EK+PF++ A +LR +H HPDY Y+PRRRK SA +
Sbjct: 141 RKMEEHEKVPFVERAKQLREEHFNAHPDYVYRPRRRKRVEKSAGS 185
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 78.2 bits (184), Expect = 3e-15
Identities = 32/50 (64%), Positives = 41/50 (82%)
Frame = +1
Query: 325 LHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRR 474
+HN+E+SK LG+ WK LSE+EK PFI EA +LR H K+HPDYKY+PRR+
Sbjct: 1 MHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKEHPDYKYRPRRK 50
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/89 (37%), Positives = 54/89 (60%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
PHV+RPMNAFM+F++ R + + P+ N +SK LG W +L+ ++K + K A +++
Sbjct: 841 PHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 900
Query: 424 TQHKKQHPDYKYQPRRRKPPLASASTPRV 510
H K HPD+K+ + +K S +T V
Sbjct: 901 EAHFKAHPDWKWSTKEKKIKSESLNTTPV 929
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/89 (37%), Positives = 54/89 (60%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
PHV+RPMNAFM+F++ R + + P+ N +SK LG W +L+ ++K + K A +++
Sbjct: 841 PHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 900
Query: 424 TQHKKQHPDYKYQPRRRKPPLASASTPRV 510
H K HPD+K+ + +K S +T V
Sbjct: 901 EAHFKAHPDWKWSTKEKKIKSESLNTTPV 929
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/89 (37%), Positives = 54/89 (60%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
PHV+RPMNAFM+F++ R + + P+ N +SK LG W +L+ ++K + K A +++
Sbjct: 76 PHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 135
Query: 424 TQHKKQHPDYKYQPRRRKPPLASASTPRV 510
H K HPD+K+ + +K S +T V
Sbjct: 136 EAHFKAHPDWKWSTKEKKIKSESLNTTPV 164
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 223 GGGCMRRPHVKRPMNAFMVFAQAMRRRLSAE--RPSLHNAELSKSLGSMWKNLSEEEKLP 396
GG + HVK+P+NAFM F + R+ L E +AEL+K LG W +LS+EE+
Sbjct: 182 GGKAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAK 241
Query: 397 FIKEADKLRTQHKKQHPDY 453
+ + A K + HK+++P++
Sbjct: 242 YFEMAKKDKETHKERYPEW 260
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 60.5 bits (140), Expect = 7e-10
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 223 GGGCMRRPHVKRPMNAFMVFAQAMRRRLSAE--RPSLHNAELSKSLGSMWKNLSEEEKLP 396
GG + HVK+P+NAF+ F + R+ L E +AEL+K LG W +LS+EE+
Sbjct: 183 GGKAKKDDHVKKPLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAK 242
Query: 397 FIKEADKLRTQHKKQHPDY 453
+ + A K + HK+++P++
Sbjct: 243 YFEMAKKDKETHKERYPEW 261
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
P + + +++F+ +R+R+ E P E+SK +G WK LSEE+K + A+ +
Sbjct: 1447 PKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVA 1506
Query: 424 TQHKKQ 441
+ KQ
Sbjct: 1507 VEKAKQ 1512
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
P + + +++F+ +R+R+ E P E+SK +G WK LSEE+K + A+ +
Sbjct: 1447 PKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVA 1506
Query: 424 TQHKKQ 441
+ KQ
Sbjct: 1507 VEKAKQ 1512
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 244 PHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLR 423
P + + +++F+ +R+R+ E P E+SK +G WK LSEE+K + A+ +
Sbjct: 77 PKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVA 136
Query: 424 TQHKKQ 441
+ KQ
Sbjct: 137 VEKAKQ 142
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 PHV-KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKL 420
PH KR ++AF ++Q R + A P ++++ LG MWK + +E K + ++A
Sbjct: 131 PHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQAD 190
Query: 421 RTQHKKQHPDYKYQPRR 471
+ ++ + +YK + ++
Sbjct: 191 KDRYADEMRNYKAEMQK 207
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 PHV-KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKL 420
PH KR ++AF ++Q R + A P ++++ LG MWK + +E K + ++A
Sbjct: 130 PHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQAD 189
Query: 421 RTQHKKQHPDYKYQPRR 471
+ ++ + +YK + ++
Sbjct: 190 KDRYADEMRNYKAEMQK 206
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +1
Query: 235 MRRPHVKRPMNAFMVFAQAMRRRLSAERPS--LHNAELSKSLGSMWKNLSEEEKLPFIKE 408
M +P V+ + + F + + P+ + E+SK WK + ++EK F +
Sbjct: 40 MGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYEL 99
Query: 409 ADKLRTQHKKQHPDYKYQPRRRKPPLASASTPRVKR 516
A K +++ + Y + RK A KR
Sbjct: 100 AQKDAERYQAEVAAYGGEDAMRKRKRAKKDPHAPKR 135
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 PHV-KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKL 420
PH KR ++AF ++Q R + A P ++++ LG MWK + +E K + ++A
Sbjct: 132 PHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQAD 191
Query: 421 RTQHKKQHPDYKYQPRR 471
+ ++ + +YK + ++
Sbjct: 192 KDRYADEMRNYKAEMQK 208
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 PHV-KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKL 420
PH KR ++AF ++Q R + A P ++++ LG MWK + +E K + ++A
Sbjct: 132 PHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQAD 191
Query: 421 RTQHKKQHPDYKYQPRR 471
+ ++ + +YK + ++
Sbjct: 192 KDRYADEMRNYKAEMQK 208
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/68 (27%), Positives = 39/68 (57%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KR + ++ F + RR S + + E++ SL + W+ L+ EE++PF + AD+ + ++
Sbjct: 128 KRNRSGYVHFI--IHRRASYSKAVMSQREINISLAADWQKLTAEERIPFQQRADEEKVKY 185
Query: 433 KKQHPDYK 456
+ +YK
Sbjct: 186 LELMEEYK 193
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 238 RRPHV-KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEAD 414
R P V +RP+ +M +++ M ++ AE P ++ K +G W +L + EK + E +
Sbjct: 21 RGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYE 80
Query: 415 KLRTQHKKQ 441
+ ++KQ
Sbjct: 81 LEKADYEKQ 89
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.5 bits (73), Expect = 0.094
Identities = 15/68 (22%), Positives = 39/68 (57%)
Frame = +1
Query: 253 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 432
KR A++++ A R + + +L +++K G+ WK++S ++K + +A + + ++
Sbjct: 562 KRATTAYIIWFNANRNSMKEDGDTL--GDVAKKAGAKWKSMSADDKKEWNDKAAQDKARY 619
Query: 433 KKQHPDYK 456
+ + +YK
Sbjct: 620 EAEMKEYK 627
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 200 QYCRNQRKVVGVCVVHTSRDR*MHSWCSRKRCAAVC-RPNDPPCTTPNSANH*DPC 364
+YC+ + ++ C V D SW C++ C R CT P N PC
Sbjct: 255 EYCKGEEEMTRSCKVPCKLDGGWSSWSDWSACSSSCHRYRTRACTVPPPMNGGQPC 310
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 200 QYCRNQRKVVGVCVVHTSRDR*MHSWCSRKRCAAVC-RPNDPPCTTPNSANH*DPC 364
+YC+ + ++ C V D SW C++ C R CT P N PC
Sbjct: 283 EYCKGEEEMTRSCKVPCKLDGGWSSWSDWSACSSSCHRYRTRACTVPPPMNGGQPC 338
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 200 QYCRNQRKVVGVCVVHTSRDR*MHSWCSRKRCAAVC-RPNDPPCTTPNSANH*DPC 364
+YC+ + ++ C V D SW C++ C R CT P N PC
Sbjct: 255 EYCKGEEEMTRSCKVPCKLDGGWSSWSDWSACSSSCHRYRTRACTVPPPMNGGQPC 310
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 200 QYCRNQRKVVGVCVVHTSRDR*MHSWCSRKRCAAVC-RPNDPPCTTPNSANH*DPC 364
+YC+ + ++ C V D SW C++ C R CT P N PC
Sbjct: 255 EYCKGEEEMTRSCKVPCKLDGGWSSWSDWSACSSSCHRYRTRACTVPPPMNGGQPC 310
>Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical
protein T20G5.6 protein.
Length = 486
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 233 HPPPFVGCGSIVS*SNIFTSFPTASFISSLSPDLS-RSW 120
+P PF ++ +N+F +P F S SPD S R W
Sbjct: 356 YPLPFYAAVQLLK-NNLFLGYPQTPFTSCYSPDKSLREW 393
>AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein.
Length = 486
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 233 HPPPFVGCGSIVS*SNIFTSFPTASFISSLSPDLS-RSW 120
+P PF ++ +N+F +P F S SPD S R W
Sbjct: 356 YPLPFYAAVQLLK-NNLFLGYPQTPFTSCYSPDKSLREW 393
>AC024751-6|AAK21506.1| 270|Caenorhabditis elegans Hypothetical
protein Y18H1A.2 protein.
Length = 270
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +1
Query: 295 RRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQ---- 462
RR+ P L EL + ++ EEK + DK + + K +H D +
Sbjct: 140 RRKARDALPCLKRKELEEERKRKREDSDSEEKAKKRHKKDKKKKKKKHRHRDSSEERQLE 199
Query: 463 ---PRRRKPPLASASTPRVKRE 519
R R+ LAS R+KRE
Sbjct: 200 EEYDRERRQKLASMRDERLKRE 221
>Z75711-6|CAB00037.3| 387|Caenorhabditis elegans Hypothetical
protein K02B12.8 protein.
Length = 387
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -1
Query: 434 LCCVRNLSASLMKGSFSSSLKFFHMDPNDLLSSALCREGRSAD 306
L C +N+ + G+ SS +K + DP +++ +L + + D
Sbjct: 40 LICKKNVRLVRLDGNISSGIKIYFADPIKMVADSLAKIQKKID 82
>Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical
protein ZK829.2 protein.
Length = 905
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +1
Query: 166 VGKLVKIFDYDTILPQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAEL 342
+G+++ + + P+ ++GGGCM+R + + M RR+ L ++++
Sbjct: 464 LGEMMALPKEFLLFPEASRGGGCMQRSDTESNFLVLVAARTDMIRRMKQRDKRLRSSDI 522
>Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amino
acid decarboxylaseprotein.
Length = 625
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +1
Query: 166 VGKLVKIFDYDTILPQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAEL 342
+G+++ + + P+ ++GGGCM+R + + M RR+ L ++++
Sbjct: 184 LGEMMALPKEFLLFPEASRGGGCMQRSDTESNFLVLVAARTDMIRRMKQRDKRLRSSDI 242
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 391 LPFIKEADKLRTQHKKQHPDYKYQPRRRKP-PLASASTP 504
+P IKEA + Q K P+YK + R P P+ AS P
Sbjct: 401 IPIIKEAIRRSLQRKHVWPNYKIRYRPFFPNPIFQASPP 439
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 391 LPFIKEADKLRTQHKKQHPDYKYQPRRRKP-PLASASTP 504
+P IKEA + Q K P+YK + R P P+ AS P
Sbjct: 230 IPIIKEAIRRSLQRKHVWPNYKIRYRPFFPNPIFQASPP 268
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 391 LPFIKEADKLRTQHKKQHPDYKYQPRRRKP-PLASASTP 504
+P IKEA + Q K P+YK + R P P+ AS P
Sbjct: 230 IPIIKEAIRRSLQRKHVWPNYKIRYRPFFPNPIFQASPP 268
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 391 LPFIKEADKLRTQHKKQHPDYKYQPRRRKP-PLASASTP 504
+P IKEA + Q K P+YK + R P P+ AS P
Sbjct: 401 IPIIKEAIRRSLQRKHVWPNYKIRYRPFFPNPIFQASPP 439
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 391 LPFIKEADKLRTQHKKQHPDYKYQPRRRKP-PLASASTP 504
+P IKEA + Q K P+YK + R P P+ AS P
Sbjct: 401 IPIIKEAIRRSLQRKHVWPNYKIRYRPFFPNPIFQASPP 439
>AF039040-3|AAB94183.1| 370|Caenorhabditis elegans Hypothetical
protein T22B11.3 protein.
Length = 370
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 345 AEFGVVQGGSFGRQTAAHRLREHHECIHRSLDVWTTHTPTTFRWL 211
AE G+V+ G FG L EHH +LD+ T PT RW+
Sbjct: 213 AERGIVKIGGFG-------LAEHH-----ALDMTTESAPTKLRWM 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,290
Number of Sequences: 27780
Number of extensions: 280282
Number of successful extensions: 991
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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